Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2301 ATGGAGGCTAGATTGGGTGGTGAAGGTTATCATTTTTATGGTGTTGGTGGTTCATCTGAATTGACTAGTATGGGAAAGAGGTCAAGAGAGTGGAATTTGAATGATTGGAGATGGGATGGTGATTTGTTTTTAGCTAGCCGTGTGAATCCGGTGCCGGCGGAAAGTATGAGAGTAGGACAACAGTTTTTCCCTCTCGGGTCTGGGATATCGGTGGCTGGGGGTTCGTCTAATACCACCTCTTCTTCATGCTCCGAGGAAGGAGATCTAGAGAATTCTAAAAGAGATAAGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGTTGGAAGGTGATGGTTTGAATGAGGAAGCTGGTGCTCTTAGCTTAAATCTTGCTGGACAGGCTTCGCCGGTGGTGGAAAGGGAGATTGCCACATGGGATGGTATGAATGGGAAAAAGGGGAGAGTAGCTGCAGGTACTCCGAATCGAGCTGTTTGTCAGGTTGAAGACTGTGGTGCAGATCTGAGTAGAGGTAAGGATTATCACAGACGTCATAAGGTTTGTGAGATGCATTCTAAGGCTAGTAGGGCGCTTGTGGGAAATGCAATGCAGAGGTTTTGTCAACAGTGTAGTAGGTTTCACATACTTCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGGAGACGCTTGGCTGGCCACAATAAACGGAGAAGGAAAACAAATACCGAAGCTGTTCCTAATGGAAGTCCAACAAATGATGATCAGACTAGTAGTTATCTGTTGATAAGTTTGTTGAAGATACTTTCAAATATGCATTCTGACAGGTCAGATCAGATTACAGATCAGGATCTACTAACCCATCTGCTAAGGAGTCTAGCTAGTCAGAATGATGAACAGGGGATCAGAAATCTTTCAAACCTGTTGCGGGAACAAGAGAATTTGACGAGAGAAGGGGGTTCTTCTAGGAAGTCAGAGATGGTGTCAGCTTTATTCTCCAATGGTTCTCAAGGCTCTCCGACTGCTATAACACAACATCAAACTGTATCTATGAATAGAATGCAGCAAGAAATGATGCATTCACATGATGTTACGGCCGCTGATCATCAGCTCATATCTTCAATAAAGCCCAGCATTTCAAACAGTCCACCAGCTTCCTCAGAAGCCAGAGATAGTAGTGCACCGGTAAAGATGAATAATTTTGATTTGAACGACATATATATTGACTCCGATGATGGCACGGAAGATCTAGAAAGATTGCCCGTCTCTACAAATCTTGGCACTAGCTCTGTCGACTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCTGCATCTGCCCAGTCCCCTTCTAGTTCTAGCGGAGAAGCTCAGAGTCGGACAGACCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCAAATGAATTTCCTCTTGTACTTAAATCACAGATTCTTGATTGGTTATCTCACAGTCCTACCGATATTGAGAGCTACATACGGCCTGGTTGTATTGTTTTGACTATTTATCTGCGTCAGGCTGAGGCTGTGTGGGAGGATCTTTGCTGTGATCTGACTTCCAGTTTGAATAAGCTGCTGGATGTCTCTGATGATCCGTTTTGGAGAACTGGATGGGTTCATATCAGGGTGCAGCATCAAATGGCATTCATTTTCAATGGTCAAGTTGTCATTGATACATCACTACCTTTTAGAAGTAACAATTATAGCAAAATTTGGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGCTCAATTTTCTGTTAAAGGTGTCAACCTGATGCGCCCTGCCACGAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGTCTGTGAAGATGCTCATGAGTCAACGGATCATTACTCCAAGGAGCTTGATGAACTTCAGTGCATCCAATTTTCATGTTCTGTCCCTGTGACGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTCTTTCCTTTCATAGTGGCAGAAGAGGATGTTTGTTCAGAGATCTGTGTGCTTGAGCCTTTACTAGAATTAAGTGAAACTGATCAAGATATTGAAAGGACTGGAAAAATTAAAGATAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGCTGGCTTCTTCACAGAAGCCAATTGAAATCTAGGATGGTTCACTTGAACTCTTCTGTAGATCTCTTTCCATTAGAACGGTTCACATGGCTTATTGAGTTTTCCATGGACCATGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACCTACTGCTTGATGAAACTGTGAATAAAGGAGATCACCCTACCCTGTATCAAGCACTTTCGGAGATGGGTCTCCTTCACCGAGCTGTAAGGAAAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGAGATATGTTCCTGACAAGGCACTAGTTGATGGAGATTATCAGAGCTTCTTGTTTAGACCTGATGCTGTTGGTCCTGCTGGTTTGACACCCCTCCATATAGCTGCGGGAAAAGATGGTTCCGAAGATGTACTGGAGGCTCTGACTAATGATCCAAGCATGGTGGGAATTGAAGCATGGAAGAGTGCCCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGATTACGTGGTCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGCACCTCATGTGGTGGTTGAGATTCCCAGCACTCCAACAGAGAGCAATACAAACCCAAAGCAAAATGAGTCGTCCACTAGCTTTGAGATTGGAAAAGCTGAAGTAAGACGCAATCAAGGGAACTGTAAACTTTGTAATACTAAAATTTCTTGTAGAACTGCAGTAGGAAGGTCTATGGTATACAGACCTGCAATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTTTGTGTGGCTCTTTTGTTTAAAAGCTCACCTGAAGTTCTGTACATGTTCCGACCATTCAGATGGGAATCATTGGATTTCGGAACAAGCTAA 3015 0.4315 MEARLGGEGYHFYGVGGSSELTSMGKRSREWNLNDWRWDGDLFLASRVNPVPAESMRVGQQFFPLGSGISVAGGSSNTTSSSCSEEGDLENSKRDKEGEKKRRVIVLEGDGLNEEAGALSLNLAGQASPVVEREIATWDGMNGKKGRVAAGTPNRAVCQVEDCGADLSRGKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNTEAVPNGSPTNDDQTSSYLLISLLKILSNMHSDRSDQITDQDLLTHLLRSLASQNDEQGIRNLSNLLREQENLTREGGSSRKSEMVSALFSNGSQGSPTAITQHQTVSMNRMQQEMMHSHDVTAADHQLISSIKPSISNSPPASSEARDSSAPVKMNNFDLNDIYIDSDDGTEDLERLPVSTNLGTSSVDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNEFPLVLKSQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEDLCCDLTSSLNKLLDVSDDPFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKIWTVSPIAVPASKRAQFSVKGVNLMRPATRLMCALEGKYLVCEDAHESTDHYSKELDELQCIQFSCSVPVTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICVLEPLLELSETDQDIERTGKIKDKSQAMDFIHEMGWLLHRSQLKSRMVHLNSSVDLFPLERFTWLIEFSMDHDWCAVVKKLLNLLLDETVNKGDHPTLYQALSEMGLLHRAVRKNSKQLVELLLRYVPDKALVDGDYQSFLFRPDAVGPAGLTPLHIAAGKDGSEDVLEALTNDPSMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAPHVVVEIPSTPTESNTNPKQNESSTSFEIGKAEVRRNQGNCKLCNTKISCRTAVGRSMVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFRPFRWESLDFGTS* 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2301 1004 Pfam SBP domain 158 231 IPR004333 GO:0003677
Tpr1g2301 1004 Gene3D - 149 219 IPR036893 GO:0003677|GO:0005634
Tpr1g2301 1004 MobiDBLite consensus disorder prediction 74 99 - -
Tpr1g2301 1004 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 17 1003 - -
Tpr1g2301 1004 MobiDBLite consensus disorder prediction 368 388 - -
Tpr1g2301 1004 SUPERFAMILY SBT domain 156 236 IPR036893 GO:0003677|GO:0005634
Tpr1g2301 1004 MobiDBLite consensus disorder prediction 222 245 - -
Tpr1g2301 1004 ProSiteProfiles Zinc finger SBP-type profile. 155 232 IPR004333 GO:0003677
Tpr1g2301 1004 SUPERFAMILY Ankyrin repeat 763 889 IPR036770 -
Tpr1g2301 1004 Gene3D - 755 904 IPR036770 -
Tpr1g2301 1004 MobiDBLite consensus disorder prediction 910 929 - -
Tpr1g2301 1004 MobiDBLite consensus disorder prediction 427 460 - -
Tpr1g2301 1004 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 1003 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2301 Tpr-Chr1 25862908 25873452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2301 1 1004 SBP-box Gene Family AT3G60030 55.871 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tpr1g2301 SBP 1.2e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2301 - - gmx:100809806 1649.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2301 1 25862908 25873452 Tpr1g2301 1 25862908 25873452 ECH