Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2300 ATGATTAGCATGAAAAACATTAGTCTTCTTACCGTCTTGAGTTTTAATCGTGGACAAACATGGTTCACTTTGTTACTTGTTATGACTCTCGTACAAATGTTACCACCGGTGACTGGTCAACCACTAGGACCGGAAGATCCAACCGAGAACAACAAATCAGTAGCCACCATCATTGAAATTGTAGCCGTTATGATCCTCTTCTCCGGTTTCCTTTCTCTATACTCATCTAGATGTAGTGATCGTCAACAAGGGGTTGTTTTCGACCTCAGTTTACCTACCGGTGGAAGTGGTCTTGGGGCACAAAACAACGAACCAAGTGACGGTCTCAACCAAGATGTTATCGACACATTCCCAACTTTTCGTTACTCCAACGTGAAGGGACACAAGATTGGAAAAAGCAATTTGGCTTGTGCTGTTTGCTTGAATGAGTTTCAAGACGATGAAACATTGCGTTTAATCCCTAAATGTAGCCATGTGTACCACCATGGTTGCATTGATATTTGGCTTGTTTCTCATAATACTTGCCCTGTTTGTCGTGCTAACCTTGATCCAAGATCTACCGATACGATTGTGCCTACAACTATAACCATTCAAATACCAGAAGGAGAATTACATCATAATGAGGAAGAAGTAGAACATGGTATTCAAGAGGAACAAAAGAGAAACAAAATTGAAGCGGAACATTCAACAAAGGTAAATTTACTTCGTAGGTCTCACACATATTGTGCATCAACACGATCAAGATCTATAGGATTCTTACCTGTTATCTTGTTATCACGGTCGAATTCGACGGGTGTGTTGGTGCAACCAGGTGAGGATTGTGAGAGGTTTACATTGAGGTTACCTGATGAAGTACGACATCAAATGATGGTGAATACAACTACGCATAAACGTGCACAAAGTTGTGTGAGTTTTACGAGAATGAGTAGTGGCACACGCGGTTATAGGTCAAAAAGTGTTGGGTGTGGAAGTGGATGGGGTCACATGCATTACGAAAGGTTTGAAAGTGAGGAGGAAGAAAACTTAGAGTTCGTTAGAAACAGTTGGAATAATAAATCTGTTAGAAAATCTCCGGTGAAGTGTTTGGAAGTTAATATGGATAATTATGGAGGTGAACGATCGTCCAATCTTTTGTTTCCTGTGTAG 1146 0.4066 MISMKNISLLTVLSFNRGQTWFTLLLVMTLVQMLPPVTGQPLGPEDPTENNKSVATIIEIVAVMILFSGFLSLYSSRCSDRQQGVVFDLSLPTGGSGLGAQNNEPSDGLNQDVIDTFPTFRYSNVKGHKIGKSNLACAVCLNEFQDDETLRLIPKCSHVYHHGCIDIWLVSHNTCPVCRANLDPRSTDTIVPTTITIQIPEGELHHNEEEVEHGIQEEQKRNKIEAEHSTKVNLLRRSHTYCASTRSRSIGFLPVILLSRSNSTGVLVQPGEDCERFTLRLPDEVRHQMMVNTTTHKRAQSCVSFTRMSSGTRGYRSKSVGCGSGWGHMHYERFESEEEENLEFVRNSWNNKSVRKSPVKCLEVNMDNYGGERSSNLLFPV* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2300 381 PANTHER RING FINGER DOMAIN-CONTAINING 1 321 - -
Tpr1g2300 381 CDD RING-H2_EL5_like 137 179 - -
Tpr1g2300 381 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Tpr1g2300 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 185 IPR013083 -
Tpr1g2300 381 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 321 - -
Tpr1g2300 381 SUPERFAMILY RING/U-box 131 185 - -
Tpr1g2300 381 Pfam Ring finger domain 136 179 IPR001841 -
Tpr1g2300 381 SMART ring_2 137 178 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2300 Tpr-Chr1 25860558 25861946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2300 53 314 Rapid Response to Elicitors AT3G05200 40.672 1.96e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2300 K10664 - gmx:100814384 304.293