Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2295 ATGGTGGCTGAAGCAGAGGTTGTGTGTCAACAAAGCGTGGATGTATTAGATGTGAAGTATTTTCCGAATAAAGGAAGCAATATACATGAGATCGGTGATGGAGATGCTATTTCTCCATCGAATTTTGAGAAAGTTCGAGTTTCTGAATCAGTTTCTGCTGAGTTACTTACTTCAAAAGAAGATACTAAGACTGCAGACATAATCTCAGAAGCTGCGGTTCTGCAATTCGTCCCCTGCATCCGTTCTGGTAGTTTTTCCGACATTGGGCCGCGTAGATACATGGAAGATGAACATATAAGGATAGATGACTTGTCTTCTAATCTGGGATCTCTGTATAATTTTCCTAAACCAAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATATAAGAAAAAATGTTATAAAATTCTTCTTTGAAGATGTAAATTTCCCTCAGACATCTGAAGTTGATAACATATTTCTACAAGAGGTGGAGAATTCCCTCAGAAAGGCTTTTCTTTTGGCAGATTCAGCTTTGGCTGATGATTGCAGTGTGAACACTTCATCAGGGACCACAGCTCTTACTGCTATGATATTTGGAAGGCTTCTAATGGTAGCGAATGCTGGTGACTGTCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCACCGACCTATTTATCCATCAGAAAGGAGGCGAGTTGAAGAATTGGGTGGTTATGTAGAGGATGGTTATCTTAATGGCGTTTTATCAGTTACGAGAGCACTAGGGGACTGGGACATGAAGTTACCTAGGGGTGCTCCCTCACCTTTGATTGCAGAGCCTGAGTTTCGCCAAATGGTTCTAACAGAGGACGACGAATTCCTCATCATTGGATGTGATGGCATTTGGGATGTGATGACAAGTCAGCATGCCGTTAGCCTTGTTCGTAAAGGTTTGAGGAGGCATGATGATCCAGAGAAGTGCGCCAGGGACCTAGTTATGGAGGCATTACGCCTCAACACATTCGACAATCTGACAGTGATCATTGTCTGTCTCTCTTCACTTGACCATGGAGAGTCAGAGTCATCACCACCTCCCCAGAGGAAATTGAGATGCTGTAGCCTCTCTGCAGAGGCTCTTTGTAGCTTGAGAAACTTATTGGAAGGAAATGCTAGCAACTGA 1179 0.4351 MVAEAEVVCQQSVDVLDVKYFPNKGSNIHEIGDGDAISPSNFEKVRVSESVSAELLTSKEDTKTADIISEAAVLQFVPCIRSGSFSDIGPRRYMEDEHIRIDDLSSNLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVNFPQTSEVDNIFLQEVENSLRKAFLLADSALADDCSVNTSSGTTALTAMIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEELGGYVEDGYLNGVLSVTRALGDWDMKLPRGAPSPLIAEPEFRQMVLTEDDEFLIIGCDGIWDVMTSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCLSSLDHGESESSPPPQRKLRCCSLSAEALCSLRNLLEGNASN* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2295 392 ProSiteProfiles PPM-type phosphatase domain profile. 81 351 IPR001932 -
Tpr1g2295 392 Pfam Protein phosphatase 2C 91 343 IPR001932 -
Tpr1g2295 392 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169
Tpr1g2295 392 CDD PP2Cc 80 351 IPR001932 -
Tpr1g2295 392 Gene3D - 60 357 IPR036457 -
Tpr1g2295 392 PANTHER PROTEIN PHOSPHATASE 2C 1 373 IPR015655 GO:0004722|GO:0006470
Tpr1g2295 392 PANTHER PROTEIN PHOSPHATASE 2C 49-RELATED 1 373 - -
Tpr1g2295 392 SUPERFAMILY PP2C-like 74 353 IPR036457 -
Tpr1g2295 392 SMART PP2C_4 71 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2295 Tpr-Chr1 25841585 25844334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2295 94 388 PP2C-type Phosphatase Gene Family AT3G62260 70.608 8.74e-156 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Tpr1g2295 PP2C 1.5e-64 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2295 K14803 - gmx:100819791 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2295 1 25841585 25844334 Tpr1g2295 1 25841585 25844334 ECH