Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2294 ATGGCAACTGCGGCGGGTGTAGTACCTGCTTCTGGATTAATAGATGTAAATGCAAGTTCAGTTTCTGCTGTTGCTGCTGCTGATACGTTACCGGATGAGATACTCGGCATGAAAATTAAGGATGATAAGGAAATGGAAGCACATGTGGTAGATGGAAGTAGTACTGAAGCAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCGAACCAAAGCAGACAATAAGCTACATGGCTGAGCGTGCTGTTGGACAAGGATCATTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCGATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTACAAACAATGCGCCTTCTGGACCACCCCAATGTTGTAACGTTGAAGCATTGTTTCTTTTCGACAACTGAAAAAGATGAGCTCTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCCATCGCGTGATCAGACACTACAGCAAAATGAATCAGAGGATGCCATTGATATATGTAAAACTTTATACTTACCAGATATGTAGAGCACTAGCTTACATTCATAACTGCGTTGGAGTGTCTCATAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGATTTGTGACTTTGGGAGTGCAAAAGTTCTGGTCAAAGGTGAACCAAACATATCTTACATCTGTTCTAGGTATTATAGAGCTCCTGAGCTTATATTTGGTGCAACCGAGTACACCACAGCCATTGACATTTGGTCAGCTGGTTGTGTACTTGGCGAACTATTGCTTGGCCAGCCTCTCTTTCCCGGTGCAAGTGGAGTAGATCAACTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACCGAATTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCGCAAGCGTATGCCAGCAGAAGCTGTGGATCTCGTCTCAAGACTACTACAATACTCTCCAAATCTTCGAAGCACAGCTTTGGAGGCCATGGTTCATCCATTCTTTGATGAATTGCGTGATCCAAACACCCGCTTACCTAATGGGCGTAATCTTCCTCCTCTATTTAACTTCAAAGCCAATGAGCTTAAGGGAGTGCCTGCTGAAATGCTGGTGAAGCTGATTCCATCTCACGCGAGAAAGCAAAGTGCCTTGTTTATGTCATAG 1245 0.4305 MATAAGVVPASGLIDVNASSVSAVAAADTLPDEILGMKIKDDKEMEAHVVDGSSTEAGHVIVTTIGGKNGEPKQTISYMAERAVGQGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVTLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYSKMNQRMPLIYVKLYTYQICRALAYIHNCVGVSHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPAEAVDLVSRLLQYSPNLRSTALEAMVHPFFDELRDPNTRLPNGRNLPPLFNFKANELKGVPAEMLVKLIPSHARKQSALFMS* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2294 414 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Tpr1g2294 414 ProSiteProfiles Protein kinase domain profile. 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2294 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Tpr1g2294 414 CDD STKc_GSK3 73 365 IPR039192 -
Tpr1g2294 414 SUPERFAMILY Protein kinase-like (PK-like) 77 386 IPR011009 -
Tpr1g2294 414 Pfam Protein kinase domain 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2294 414 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 4 412 - -
Tpr1g2294 414 PANTHER SHAGGY-RELATED PROTEIN KINASE ALPHA 4 412 - -
Tpr1g2294 414 Gene3D Phosphorylase Kinase; domain 1 62 157 - -
Tpr1g2294 414 SMART serkin_6 78 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2294 414 Gene3D Transferase(Phosphotransferase) domain 1 158 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2294 Tpr-Chr1 25810926 25814501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2294 84 365 Core Cell Cycle Gene Families AT1G76540 35.517 7.85e-56 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Tpr1g2294 Pkinase 3.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2294 K00924 - gmx:100788046 748.814