Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2285 ATGATAGATATGGATATTAAGATTAAGAAAAGTGATGAGTCTGCAAAGCTCAACGAATTAAGAAAAGGTCCATGGACATTAGAAGAAGACACCATTTTGGTTAATTACATTTCAACCCATGGTGAAGGTCACTGGAACACTGTTGCATGTTCTGCAGGTCTTCGGAGAAGTGGGAAAAGTTGTAGATTACGGTGGTTAAACTACTTGCGTCCTGATGTACGCCGAGGAAATATCACACTCCAAGAACAGATTTTGATTCTTGACCTCCACTCTCGCTGGGGCAATAGGTGGTCGAAAATTGCCCAACATCTACCAGGAAGAACGGACAATGAAATAAAAAACTATTGGAGGACAAGAGTGGTCAAGCAGGCAAAGCAACTCAAATGTGATGTCAACAGCAAACAGTTCAGAGACGTCTTGCGTCATGTTTGGATGCCTCGTTTGCTCGAACAGGTTCAACCTGTACCCCAAATCCCTGACTCGAATAACTTGAACCGACCAAATTTCATTCTTAACCAAAACACATTGAACAGTTCAGTTTCGGAAATAGAGTGGCCAAAATCAAACAACTCTTCAATTGCTAGTCCTATTTCCTCGAACTCGTCATCAGTTGAATTTCAAGTTCCTTCGAATTCGGAGCTGTTGAATCATGATGGCTCGAAACTATGGTCAAATTTCAATAACCAGGTATCAGAACAGGGGAATAGTGGTGATTGTGACTCATTGGAGAATTTGTGGAACGATGAGAACATGTGGTTTTTGCAACAACTTTCTGATGATCTTGAAATAAAATACAATTACTTTGCGTGA 810 0.4062 MIDMDIKIKKSDESAKLNELRKGPWTLEEDTILVNYISTHGEGHWNTVACSAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVVKQAKQLKCDVNSKQFRDVLRHVWMPRLLEQVQPVPQIPDSNNLNRPNFILNQNTLNSSVSEIEWPKSNNSSIASPISSNSSSVEFQVPSNSELLNHDGSKLWSNFNNQVSEQGNSGDCDSLENLWNDENMWFLQQLSDDLEIKYNYFA* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2285 269 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 5 260 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr1g2285 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 69 IPR017930 -
Tpr1g2285 269 CDD SANT 24 69 IPR001005 -
Tpr1g2285 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 124 IPR017930 -
Tpr1g2285 269 ProSiteProfiles Myb-like domain profile. 70 120 IPR001005 -
Tpr1g2285 269 Pfam Myb-like DNA-binding domain 75 118 IPR001005 -
Tpr1g2285 269 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Tpr1g2285 269 SMART sant 21 71 IPR001005 -
Tpr1g2285 269 SMART sant 74 122 IPR001005 -
Tpr1g2285 269 Gene3D - 22 74 - -
Tpr1g2285 269 SUPERFAMILY Homeodomain-like 20 116 IPR009057 -
Tpr1g2285 269 PANTHER MYB TRANSCRIPTION FACTOR 5 260 - -
Tpr1g2285 269 Gene3D - 79 120 - -
Tpr1g2285 269 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Tpr1g2285 269 CDD SANT 79 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2285 Tpr-Chr1 25662071 25663500 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2285 19 167 MYB Transcription Factor Family AT1G48000 70.470 1.43e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g2285 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2285 K09422 - gmx:778065 311.997