Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2283 ATGGATACCAATTACAAAACCAATGTTCATGTAATGAGGAGTTTATCAGATTGTGGTTCATCAGAAGCAAATGTAAGTGAAGAAGATATTATGGTGATAAAGAAAGGTCCATGGACAGAGGATGAAGATGCTGTTCTGATGAACTATGTGGCTGTTCACGGCGAAGGTCATTGGAACTCTGTCGCTCGCTGTTCCGGACTAAAGCGAACTGGGAAAAGTTGTAGATTAAGATGGTTGAACTACTTACGTCCGAATGTTCGACGTGGGAATATCACTTTACAAGAACAGATTTTGATTCTTGATCTCCATTCGCGTTGGGGCAACCGGTGGTCTAAAATAGCGGAACAATTGCCAGGAAGAACAGACAATGAGATAAAGAACTATTGGAGGACAAGAGTGGTGAAGCAAGCTAGGCAACTCAAATGTGATGTAAACAGCAAACAATTTAGAGACATGTTGCGTTACGAATGGATTCCACGCCTCATCGAGAGGATCCAATCTACTTGTACAACTGCAGATACTAATTCCTATAGTCAGACGCAAACCACCAATTGCAATAATACTAAAGCTCATAGTGACACCTGTGGCGCAAATGCAAATCCTCTCATGTTGTCGTCTGATGTTTCATCGTACTCCTCAGAGGTTGATGTTTTAGTAGAATCAAACATATCTAATTACAATTTAATGGATAGTGCGGAATTCGGTTCCACGTGGCAGGAGTGGAATTGCTTAGACTCAAACATACAAGGATTTGAACAGAACAATGGTTTTTTTGGTGGTTCTGAATTATGGACAGATGAAAACATATGGTTCTTGCAGCAGCAACTTGCAGATGATTTATGA 843 0.4057 MDTNYKTNVHVMRSLSDCGSSEANVSEEDIMVIKKGPWTEDEDAVLMNYVAVHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQILILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKQARQLKCDVNSKQFRDMLRYEWIPRLIERIQSTCTTADTNSYSQTQTTNCNNTKAHSDTCGANANPLMLSSDVSSYSSEVDVLVESNISNYNLMDSAEFGSTWQEWNCLDSNIQGFEQNNGFFGGSELWTDENIWFLQQQLADDL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2283 280 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 22 274 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tpr1g2283 280 PANTHER MYB TRANSCRIPTION FACTOR-RELATED 22 274 - -
Tpr1g2283 280 SMART sant 87 135 IPR001005 -
Tpr1g2283 280 SMART sant 34 84 IPR001005 -
Tpr1g2283 280 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Tpr1g2283 280 ProSiteProfiles Myb-like domain profile. 34 82 IPR001005 -
Tpr1g2283 280 Gene3D - 34 87 - -
Tpr1g2283 280 Gene3D - 92 133 - -
Tpr1g2283 280 SUPERFAMILY Homeodomain-like 33 129 IPR009057 -
Tpr1g2283 280 CDD SANT 92 131 IPR001005 -
Tpr1g2283 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 137 IPR017930 -
Tpr1g2283 280 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Tpr1g2283 280 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Tpr1g2283 280 CDD SANT 37 82 IPR001005 -
Tpr1g2283 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 86 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2283 Tpr-Chr1 25644479 25646020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2283 21 279 MYB Transcription Factor Family AT2G47190 46.715 9.10e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g2283 Myb_DNA-binding 6.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2283 K09422 - gmx:778040 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2283 1 25644479 25646020 Tpr1g2283 1 25644479 25646020 ECH