Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2282 ATGGTTCCAAGAACCTATTTTCAGCTCCTTTTATTTCTTCTTTCATTGTTATACCTCAGTTGCAGATCAAATATGGAGTCTGATTTTGAAAATTGGATATCATGGAACATGAAGAGTTACCAGAAAAAGTCCATAATGGAAAAGAAATATCGAAATGTGAGTGCCATTGGGCAGGGTCTTGATTTGAAGCTGAGGCAAGCTGAGAGTAAGAAAATTAGTTTAACAGTTAGCCAAAATGGTGCTGCTGATTTTAAGAGCATTACAGAAGCTATTAATAGCATTCCACCATACAACACTAGAAGAGTTATTTTGTTGATCGCGCCCGGTGTTTATAGGGAGAAAATTGTGATCCCTAAAACATTGCCTTTCATAACATTCTTAGGAGATTCAAGGGATCGACCAACTATTACTGGAAATGATACAGCTTCTGTTGCAGGAAATGATGGGGCTTTGTTGAGGACGTTCAATAGTGCGACTGTTGCTGTGAATGCTAGCTATTTTGTAGCCATCAACATTAAATTTGAGAACACTGCTTATGTTCCTATTGGATCGGAAGTAGACCAAGCCGTTGCGCTTCGCATCAGCGGAACCAAAGCAGCTTTTTACAATTGCTCCTTCTATGGGGTTCAAGACACTCTATATGATCACAAAGGCCTTCACTACTTCAAAAATTGTTTCATTCAAGGGTCTGTTGATTTTATCTTTGGTTATGGGAGGTCTCTTTATGAGGGTTGCACTATAAACTCCATAACCAAGAACATGACCTCCATCACAGCTCAAAAGCGTTCGAGTTCGTCATTAGATAGTGGATTCTCCTTTAAAAATAGCACAGTAACAGGTAGTGGACGAGTTTACCTTGGAAGACCATGGGGAGATTATTCAAGAGTCGTTTTCTCTTACACTTTTATGGACAAAATTGTTCTACCCAAAGGATGGAAGGATTGGGAAGACCAAAAGCACTACTTGAATGTATATTATGGAGAATACAAGTGTAGTGGGCCTGGATCCAATTTCACTGGAAGAGTTCCATGGGCACGGTTACTAACGGACGAAGAGGCCCAACCTTTTATTGGAATCCATTTCATCGAAGGGGACACTTGGCTTATTAGCCCTTAA 1116 0.3996 MVPRTYFQLLLFLLSLLYLSCRSNMESDFENWISWNMKSYQKKSIMEKKYRNVSAIGQGLDLKLRQAESKKISLTVSQNGAADFKSITEAINSIPPYNTRRVILLIAPGVYREKIVIPKTLPFITFLGDSRDRPTITGNDTASVAGNDGALLRTFNSATVAVNASYFVAINIKFENTAYVPIGSEVDQAVALRISGTKAAFYNCSFYGVQDTLYDHKGLHYFKNCFIQGSVDFIFGYGRSLYEGCTINSITKNMTSITAQKRSSSSLDSGFSFKNSTVTGSGRVYLGRPWGDYSRVVFSYTFMDKIVLPKGWKDWEDQKHYLNVYYGEYKCSGPGSNFTGRVPWARLLTDEEAQPFIGIHFIEGDTWLISP* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2282 371 SUPERFAMILY Pectin lyase-like 73 368 IPR011050 -
Tpr1g2282 371 Gene3D - 69 370 IPR012334 -
Tpr1g2282 371 Pfam Pectinesterase 74 365 IPR000070 GO:0030599|GO:0042545
Tpr1g2282 371 PANTHER PECTINESTERASE 21 369 - -
Tpr1g2282 371 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 21 369 - -
Tpr1g2282 371 ProSitePatterns Pectinesterase signature 2. 227 236 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2282 Tpr-Chr1 25636256 25639197 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2282 74 368 Carbohydrate Esterase AT5G47500 48.148 1.35e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2282 K01051 - cit:102614801 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2282 1 25636256 25639197 Tpr1g2282 1 25636256 25639197 ECH
Tpr6g0841 6 7236401 7239146 Tpr1g2282 1 25636256 25639197 PCT