Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2279 ATGGATGTAAAAGACATACTCGGATTACCCCAAATTTCCTTCCCAGTTCAGGAGAAGAATTCTCAACCTCATAATCAGTCTCAGAGAAAACCCGATGACATTTCCCGGGAGGTTTATGCACTTACGGGTGGATTGGCACCTCTTATACCTGCAGTTGATTTGTCTCTGTTGAATAAAAGACCTCAATCAGATGAAAAGGTCATCTGGAAATGGCTTCCTTTCAAAAATTCTGCTCGTAAAGATGATCTTCAGCTTTACCATTGGGTTCAAGTTTTAAATGGTGTTCCACCAACAGAGGACTATTCTTTTGCCAAGTATAACAAGTCTGCTGACATAACAAGATACACAGACGAGGAGTATGAAAAATATTTGGCAAATCCTAAATGGACCAAGGAGGAAACAGATCAGTTGTTTGAGTTGTGTGAGAGATTTAATCTCCGATTTATTGTTATAGCTGATAGATTTCCCTCATCTCGAACAGTTGAAGAATTAAAGGATCGATACTATAGTGTTTCCCGAGCAATATTAATCGCGAGGAATCCATCTTCTGGGGATGTTGCAGTGCATCCACTTGTCAAGGAACCATATAACGTTTCACACGAGATGGAGCGGAAAAGAGCTATGTCCCTGGTGCTCTCTCAAACAAGGCAACAAGAGCGAAGAGATGAAGAGGTGCTTGCCGAAGCAAAAAGAATTGCTGAATTACGCTTAATGACCAAGGTTGCTGAAGAGGCTGAGTTGGTTGTTACTTCAAATGCTGGAGAAGACGTTACAGAGAGGGCCAACCCATCTCCATCAAATATGGAACTTCCACTGATAGTTGTGCCTTCCCCAATAAAAACAGATAATGCATCTACTGTAGCTTCTCTCCGCATGCTTCATGTGTATTTAAGAACCTACGCACTTGAACAAATGCTGCAATCTGCAAGCTCATCAGCTGGACTTCGGACTATCAACCGTGTTGATCAAACTTTGCAGGAACTTGGGGTCAATTTGAAACCAAGGGTTCCAACAAAAGCTGTTTGTGCAGAGCATCTTGAACTAAGAAATGAAATACTAACGCTGCTGAATATTCAGAAACAGCTGCAAAATAAGGAGGCTGAAGGTTCATCTTTTCGTGATGGGTCAAACTGTGAAACAACAGGAACACCAAAGCGTTCACATCGTGGAGATCAGGATCGGACATTTGTTCCAGATAACACAAGTTCTGGAGGGGAAAGAATTGGTAAAAGGGATCAAAAGCGCAAGGCATCTGGACGACATTCAGAAGTTCCGTCATCACCGGCCCAATTGAAAAGGCAGAAAAAACTATAG 1314 0.4209 MDVKDILGLPQISFPVQEKNSQPHNQSQRKPDDISREVYALTGGLAPLIPAVDLSLLNKRPQSDEKVIWKWLPFKNSARKDDLQLYHWVQVLNGVPPTEDYSFAKYNKSADITRYTDEEYEKYLANPKWTKEETDQLFELCERFNLRFIVIADRFPSSRTVEELKDRYYSVSRAILIARNPSSGDVAVHPLVKEPYNVSHEMERKRAMSLVLSQTRQQERRDEEVLAEAKRIAELRLMTKVAEEAELVVTSNAGEDVTERANPSPSNMELPLIVVPSPIKTDNASTVASLRMLHVYLRTYALEQMLQSASSSAGLRTINRVDQTLQELGVNLKPRVPTKAVCAEHLELRNEILTLLNIQKQLQNKEAEGSSFRDGSNCETTGTPKRSHRGDQDRTFVPDNTSSGGERIGKRDQKRKASGRHSEVPSSPAQLKRQKKL* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2279 437 SUPERFAMILY Homeodomain-like 126 175 IPR009057 -
Tpr1g2279 437 Pfam SANT/Myb-like domain of DAMP1 101 175 IPR032563 -
Tpr1g2279 437 PANTHER BNAA04G26950D PROTEIN 2 436 - -
Tpr1g2279 437 Pfam DNA methyltransferase 1-associated protein 1 (DMAP1) 311 377 IPR008468 GO:0005634|GO:0045892
Tpr1g2279 437 PANTHER DNA METHYLTRANSFERASE 1-ASSOCIATED PROTEIN 1 FAMILY MEMBER 2 436 IPR027109 GO:0006281|GO:0006338|GO:0035267|GO:0043967|GO:0043968
Tpr1g2279 437 MobiDBLite consensus disorder prediction 366 383 - -
Tpr1g2279 437 CDD SANT_DMAP1_like 129 171 - -
Tpr1g2279 437 MobiDBLite consensus disorder prediction 366 437 - -
Tpr1g2279 437 SMART sant 125 174 IPR001005 -
Tpr1g2279 437 MobiDBLite consensus disorder prediction 405 421 - -
Tpr1g2279 437 Coils Coil 348 368 - -
Tpr1g2279 437 Gene3D - 97 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2279 Tpr-Chr1 25578829 25587107 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tpr1g2279 DMAP1 8.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2279 K11324 - pvy:116132595 635.95