Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2250 ATGGCATTGCTTCGACCTTCATCTTTCCTAATCTTATTGGCATATGGTGCACTAATAGTCATAGCCACATTGACACCATGTTGGTATGTCATGGTCACACATATTGAGAAACATGTGAATTTGCACTCAGCAAATATTGTGTCCCAATTGCAATCACAAGTTGAGTACTCTAATCAACTCTTACAACCAATTAAATCATCATCAACAAATTTATCAAGATTATTGAGTTCAACCCTTAATTCTACTAACATCACTTTCTTTGATGTTAACACCAAGGTTGCTCCGGTGTTATTTCAAGCGTTGAAGACAATTCCTCAATTAACACAAATCTCATACTTGGGAGTGGAAGGTCTTTTTTTCACACATTACAAGGATGGTGATCAAGTTCTGGCAATGTACTCTAACTCATCAAGTCGGGGTGCATCAAATAAAACCATATACTATATTCAACCCGTAAATCGTGACACCGGAGAGATTATTGGTGAAGCCCTAATTTCTAATATGACTATCAATATTGATGCAAGTTGGATAAATGGAGCAAATAATATTTCACAAGAATTTGTATCATTGGGGACAAAGTTGAGCAATGTTAGTGATCTTTTGTTCATAAATTCAGCTAGAATCAATAGAATAGGAGGGATCTCTCTTGGATTTTCGGCAAACACATTAACCGATTATGTGACTCGCACTGTCGATCGTCAAGGGACAAAATCGTATTTGGCTACCAAAGACGGGAAAGTTATTGCAAAAGGAATTCAAAATATTCGTTTGATGGTTTTTAACGATAGTGTTTCTTTACAATCTTTGAATGCTAATGGTGATCTAATAAAGAATGAGGGAATTGTATCTTGCAAGGATCAAGTTGATGGTTCAAGTTTGAATATTCAAGATACTCAATATTTGATACATTGCTACCCCATTGATATTATGGGAATAGAATCGGTATATGTATTGGCTGTCCCACAAAATGAAATTCTCAGCATTAATCCAAGTTACTACAAACAAAAGGGATTAATACTCATGATTGTGATGATGGTTGTAATATTCATGTCTCTCTTGAGTTTTCTATTCATGAATGTTGGAGTCAAAAGAAGAGAAATGCAATTATGTGCTTCACTCATAAAACAAATGGAAGCAACAGAACAAGCTGAAAGAAAACATATGAACAAGAGTCTTGCTTTTGCTAGTGCTAGCCATGATGTTCGTGCTTATCTTGCTGGTCTTGTTGGTTTGATTGAGATGTCTTCTAAATTACTTGTTTCTAATTCAGAATTAGACAAACCACATTCTGAATTAGAGACTAATTTAAAACAAATGGATAATTGTGCACAAGACTTGCTAGGATTGTTAAATTCTATACTTGACACAAGCAAAATTGAGGCAGGAAAAATGCAACTAGAGGAAGAGGAATTTGATTTATCATATCTCCTTGAAGATGTAGTTGATTTGTACTATCCAATTGCAATGAAGAAAGGTGTAGAACTTGTATTGGATCCTTGTAATGGTTCTGTTATCAAATACTCACATGTGAAAGGTGATAGAAGAAAATTGAAGCAAGTTTTGTGTAACTTGTTAAGCAATGCTGTTAAATTTACTGATGAAGGACATATAACAGTTAGAGCATGGACTCAGAAAGCAACATTGCAAAATTCAATTATCAAGACCAACCAAAATATAAGTGTTGTGAAACCTTTTTCTTGGTTGTTTGATAAGAAAAATAAGGAATCTGAGGACATTGAAGCTGTGAATTCTATTCAACATGATCCTTGTTTTATGGATTTTGTATTTGAAGTGGATGATACAGGGAAAGGAATTCCTAAAGAGAATCATAAGTCAGTGTTTGAGAATTATGTTCAAGTTAAAGAGAATTCTGTTGGTCAAGTTGGAACTGGCTTAGGACTTGGAATTGTGCAGTCATTGGTACGTTTGATGCATGGAGATATTGCAATTGTGGACAAAGAAGTTGGCAAAAAAGGAACATGCTTCAAGTTCAATGTACTTCTCACTACATGTGAGAATGAGACAGTAACTTATAGCTTAAGGGAAGGTTTTGAGTATGGATCAACCTCAGGTAACAAAAACCAAACTCAAGATAGAAAAACCCTTCACGCTACTAGTTCTGGTTCAAGCATTCGTTCATCGAGTCCAAGATTACAAATTTGTCCCTCTTCTAGTACTACTAAGCCTGAGCCTTCACATGTTATTCTCTACCTTGCTGATGAAGAAAGAAGAAGAACTTCACAGTTGTTCATAGAAAGCTTAGGGATTAAAGTTATGGTTATCAAGAATAGGAAACATCTAACTCATACTCTCAAGAAGTTCAAAAAACCAAAGGGTCATCAAATCAGTGATCAAAGTTCATCAGAATCTTCAGAAATAAGTTCTAGGTGTACATCTTATAGTTCTTCTTATAGTAGAAGATTTCCTTTGAGGGCTATGGATCATGGAAATGAATTTGTATCGTCGATGTTCAACAAGACAAATATTGGAGCTGCACCAAGTTTTGTTTTGATTATCATTGATACAAATGTAGGACCATTTTCTAAGCTTAGTAAGATTGTGTCAAATTTTAAGAAAGATGTTCTTAATCCTAGTAAAGTTGTTTGGTTAGAAAAGCCTTTTGAAAATAGTGTTGATTTCAAGAAAATTGATCAAGATGATATTGTGATATCAAAACCATTTCATGGTAGTAGATTGTTTCAAGTTATAAAGCTTCTTCCTGAATTTGGTGGTAATTGGAAAAGCAATAATTCTAGTAAATCAAGAAGAGAATTTAGATCACAATCTAATGATGAAAGTGTGTGTCTAAGTGTGGAACAATATTGTTGGAAGGGAAGTCAAAAATCTTATAAGGGGAAAAAATATTCTGTTCATCAAGGTGAAATACAAGAATGTGGTGACTCAAGTAATTCTAAACCTTTGAGTGGAAAGAAATTTTTGGTTGCTGATGATGATAAAATCTCGAGAAAGATTGCTATGGCTAAATTGAGGTCACTTGGTGTGAGTACTATTGACCAATGTGAGAATGGTGTAGAGGCTGTGAGATTAGTTGAAGAGGGTTTAACTAAGGATTTTTCTAATCCTCCTTATGATTACATCATAATGGATTTTCAGATGCCAGAGATGGATGGGTTTGAGGCAACAAGGAAGATAAGAGAGATGGGGAAAAGATGTGGCCTTCACATTCCTATCATTGCATTATCTGCTGAAATTGATAAATTGACCACAGAAACTGGAATGGACTTTCACATAACCAAGCCTATTAACGAGGAGCATTTACTCAAAGCAATTACATGCATAGAAAATAGTGACATAATGTAG 3321 0.3466 MALLRPSSFLILLAYGALIVIATLTPCWYVMVTHIEKHVNLHSANIVSQLQSQVEYSNQLLQPIKSSSTNLSRLLSSTLNSTNITFFDVNTKVAPVLFQALKTIPQLTQISYLGVEGLFFTHYKDGDQVLAMYSNSSSRGASNKTIYYIQPVNRDTGEIIGEALISNMTINIDASWINGANNISQEFVSLGTKLSNVSDLLFINSARINRIGGISLGFSANTLTDYVTRTVDRQGTKSYLATKDGKVIAKGIQNIRLMVFNDSVSLQSLNANGDLIKNEGIVSCKDQVDGSSLNIQDTQYLIHCYPIDIMGIESVYVLAVPQNEILSINPSYYKQKGLILMIVMMVVIFMSLLSFLFMNVGVKRREMQLCASLIKQMEATEQAERKHMNKSLAFASASHDVRAYLAGLVGLIEMSSKLLVSNSELDKPHSELETNLKQMDNCAQDLLGLLNSILDTSKIEAGKMQLEEEEFDLSYLLEDVVDLYYPIAMKKGVELVLDPCNGSVIKYSHVKGDRRKLKQVLCNLLSNAVKFTDEGHITVRAWTQKATLQNSIIKTNQNISVVKPFSWLFDKKNKESEDIEAVNSIQHDPCFMDFVFEVDDTGKGIPKENHKSVFENYVQVKENSVGQVGTGLGLGIVQSLVRLMHGDIAIVDKEVGKKGTCFKFNVLLTTCENETVTYSLREGFEYGSTSGNKNQTQDRKTLHATSSGSSIRSSSPRLQICPSSSTTKPEPSHVILYLADEERRRTSQLFIESLGIKVMVIKNRKHLTHTLKKFKKPKGHQISDQSSSESSEISSRCTSYSSSYSRRFPLRAMDHGNEFVSSMFNKTNIGAAPSFVLIIIDTNVGPFSKLSKIVSNFKKDVLNPSKVVWLEKPFENSVDFKKIDQDDIVISKPFHGSRLFQVIKLLPEFGGNWKSNNSSKSRREFRSQSNDESVCLSVEQYCWKGSQKSYKGKKYSVHQGEIQECGDSSNSKPLSGKKFLVADDDKISRKIAMAKLRSLGVSTIDQCENGVEAVRLVEEGLTKDFSNPPYDYIIMDFQMPEMDGFEATRKIREMGKRCGLHIPIIALSAEIDKLTTETGMDFHITKPINEEHLLKAITCIENSDIM* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2250 1106 ProSiteProfiles Histidine kinase domain profile. 396 670 IPR005467 -
Tpr1g2250 1106 SUPERFAMILY CheY-like 975 1099 IPR011006 -
Tpr1g2250 1106 Gene3D - 372 463 - -
Tpr1g2250 1106 SMART HisKA_10 389 462 IPR003661 GO:0000155|GO:0007165
Tpr1g2250 1106 PANTHER HISTIDINE KINASE CKI1-LIKE 34 1098 - -
Tpr1g2250 1106 PANTHER TWO-COMPONENT HISTIDINE KINASE 34 1098 - -
Tpr1g2250 1106 PRINTS Bacterial sensor protein C-terminal signature 594 608 IPR004358 GO:0016310|GO:0016772
Tpr1g2250 1106 PRINTS Bacterial sensor protein C-terminal signature 612 622 IPR004358 GO:0016310|GO:0016772
Tpr1g2250 1106 PRINTS Bacterial sensor protein C-terminal signature 628 646 IPR004358 GO:0016310|GO:0016772
Tpr1g2250 1106 Gene3D - 464 675 IPR036890 -
Tpr1g2250 1106 MobiDBLite consensus disorder prediction 689 727 - -
Tpr1g2250 1106 MobiDBLite consensus disorder prediction 772 794 - -
Tpr1g2250 1106 CDD REC_hyHK_CKI1_RcsC-like 979 1097 - -
Tpr1g2250 1106 Pfam Response regulator receiver domain 980 1097 IPR001789 GO:0000160
Tpr1g2250 1106 CDD HisKA 390 458 IPR003661 GO:0000155|GO:0007165
Tpr1g2250 1106 ProSiteProfiles Response regulatory domain profile. 978 1101 IPR001789 GO:0000160
Tpr1g2250 1106 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 451 665 IPR036890 -
Tpr1g2250 1106 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 512 669 IPR003594 -
Tpr1g2250 1106 SMART REC_2 977 1097 IPR001789 GO:0000160
Tpr1g2250 1106 Gene3D - 956 1103 - -
Tpr1g2250 1106 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 377 464 IPR036097 GO:0000155|GO:0007165
Tpr1g2250 1106 SMART HKATPase_4 512 670 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2250 Tpr-Chr1 25276799 25284367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2250 5 1090 Histidine Kinase Gene Family AT2G47430 38.596 0.0 679
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g2250 HATPase_c 2.1e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2250 - - cam:101504256 1211.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2250 1 25276799 25284367 Tpr1g2250 1 25276799 25284367 ECH