Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2249 ATGGGAGAAGTTATTTTGTTGGTTGATAATTTGAAATCAATTTCTGGATTTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAAAGCTTCAAAAGCTTAGAAGCTCCTTGTGCTTGTTCTGGTACTGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGTAATGAGAAAGGAAACACAACTTGTGAAATTTGTTTACAGCAATATGAACCTGGATATACAGCACCGCCACCAAAAAAACCTCAAAAATCTGACGAAGCAATGACCATTGGCATTAGAGATAGCCTTGAAATATCATCAAGGAGGGAGGAAGAAGGTTTAAACAGAAGAATAGTAATAACAAGACAACAAAATAATTACTCAGAATGTAACTATGCTGCTGATAGAAGCGCGTCTTGTTGTCGATCCCTGGCTTTAGCGTTTACTCTCATATTACTTTTAAGACATCTTTTTGCTTTGCTTACAAATGGAATGGAAGATTATCCATTTACAATTCTTACGATCTTTATGCTAAGGGCCAGTGGAATTATTATACCTATGTGCATAATTATTAGGACTATGGGTGCCATTCATAAAAGTATTCAGCGTCATTATCAACAGGATTCTGAGGATGACTCATCAACGTCTGATGGAGATGATGAAGAAAATGAGACATCACATATTGCAATTATAAGACATTCACATTATTAG 696 0.352 MGEVILLVDNLKSISGFSRCRICHEEEFESFKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPPKKPQKSDEAMTIGIRDSLEISSRREEEGLNRRIVITRQQNNYSECNYAADRSASCCRSLALAFTLILLLRHLFALLTNGMEDYPFTILTIFMLRASGIIIPMCIIIRTMGAIHKSIQRHYQQDSEDDSSTSDGDDEENETSHIAIIRHSHY* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2249 231 SUPERFAMILY RING/U-box 18 72 - -
Tpr1g2249 231 SMART ringv_2 19 68 IPR011016 GO:0008270
Tpr1g2249 231 CDD RING_CH-C4HC3_MARCH 20 67 - -
Tpr1g2249 231 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Tpr1g2249 231 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 1 228 - -
Tpr1g2249 231 Pfam Protein of unknown function (DUF3675) 73 189 IPR022143 -
Tpr1g2249 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 77 IPR013083 -
Tpr1g2249 231 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 228 IPR033275 -
Tpr1g2249 231 MobiDBLite consensus disorder prediction 199 219 - -
Tpr1g2249 231 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2249 Tpr-Chr1 25265167 25274239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2249 20 67 C3H Transcription Factor Family AT2G37950 44.898 4.02e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2249 - - gmx:100797029 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2249 1 25265167 25274239 Tpr1g2249 1 25265167 25274239 ECH
Tpr6g0471 6 3826705 3829687 Tpr1g2249 1 25265167 25274239 PCT