Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2245 ATGCTTGAAACCAATCACTCATCGCGAATCTTTCGCGGTGTTCATTTTGCTCTCTTTGGTTTCGATCCTCACACTGAATCTCAGATACGATTCAAGCTTGTTAATGGCGGTGGAATTGATGTGGGGAAAAACAGTGGGAGTTGCACGCATGTCATTGTTGATAAGATTGCTTATGATAATTCTGTGTGTATTGCTGCTAGAAATGATGGAAAGACGTTAGTCACTGCATTGTGGGTTGAACACAGTGCTGATATTGGACTGCCTGTTGATGCTAACTCGGTTATGTACAGACCGCTGAAAGATTTGGATGGCATTCCAGGTGCAAAAGATTTGATTGTCTGCTTGACTGGCTATCTACGCCAGGATCGGGAAGACATTATGACAATGGTTAGCCTGATGGGTGCACAGTTTTCTAAACCATTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGGGAGAAATACGAGCTTGCCAAGAAATTGGCCACAATAAAGCTAGTTAATCATCGTTGGCTGGAAGATTGCTTGAAGAATTGGGTGCTTCTTCCTGAAGACAAATATAACAAGAGTGGTTTTGAACTGGAGATGATGGCGGAAGAGGCTAAGGATTCTGAGGATGAGGCTGAAGATTCTAAGCTGGGGCAATCAGGGGGAAGGAATAGAAGCAGAAGTCCCCTTGGTTCAAAATTTGGTACAGCTGTAACTCATGGATTGTCAAAATCTTTAAGAGAGGAAGCATCAAATGCCATCCCAGATTCTACTGGTCCTCAGGTTTTTCCAAATGCCGATAACGGTAAAGACTCTTCAACTACTACAGGAAATAAGAACAATTCTGATCAAGACGTAAACTTGCATAATATTGGTAACCTAAATGATCTTGGCATTACCGTAAATACAAATTCATCTGGTCAGCGACCTAATCTGCGTGATGACACTTCGGAGACGAAGAAGTTAAGTTACACAGGATCAACTTCTGCAAGTGCTGATGTACTTGCACATTCAGATGGAAAGCTCGGTGCTCCAAGTTATTCTAGGAAGAACCAAAAAGGGTTTAAATTTTCAAGGGGATTAGACGAATGTGATGGCAACAACCTTGAAACCCCTTCCACCAAGGTAGAAAAGACAAGTGAGGGAATCAAATCTGCCTGTGTTGAAGGTTCTGGGAAAGAAACTGGTGTTATTCAAGAGGATTATGGAAATAATTTATTGCCTCAAAAGAGGACGAATGAAGCCGCTTCAACCAAATCAAAATCAAGAAAGATCACTGCTAATGCAAAGTTGTCTATTGAAAGAACACAACCGGCAAATGGTAAATCTCAAGGATTAAAAGTGTCATCTGTGGTTGATGAGCCACCTGTGTCTGATGGCTTTCTTTCTGCTGACAAAGATGGTAAAAATAACTTAGATACTTGCTTGATTTCTAAATCTGCAGCTTCTGCCACCAACTCAGTGGCATTTGATAAGCCTGTCTCAAGAAATGCAGAGTCTTCTCAGTGTAATAATGCTCGTCAGAATTCCGCAAAAAAGGCTGTTCAGAGCTTAAGTAAGTCTAAAATTAGTGGCGAGACTGATATAACAGGTTTTGAAATGGGGCAAAGTGATAACGAAGCAGAGAAATTTAATATCAATACAAATCTCGAGTGTCCATCACCAGGAAAGAAGTCAAAAGATGAAGGATTTGCTGGTCTTGATAATTGGGATTTAATCAATGAAGAAAGCAATAAGCTGATTAAAAAGTCACCCCGCAAGAAGTCAGCTGCCAAGAGAACTTTGGGTTCTAGGCCCAGAAAAGGTGTTACTGCTAAATTGAAAAGTCCAGTTTCCTTGAATAAAACTATGCAGCAAGATGAAGGCGTAAGTTCCTCCAGTAGAAGCAAAGAAATAGCAACTTCTTGCACTAAGAAGCATCAGGCATCACCCGAAATCCTTGATGTTAATAAATTGATGGAGCAAGAAAAGGTTTGTGAGTATGCTGAAGACGTTGGTGGCAAAACTGATTTTTTGGATGACGAAACAGAGGCTCCAGATGACAAGTGTGAATATGAGTTGGGAGTGGCTCCTGACGAAGAATTGGTTCATCTTTCAAAGAAATTAGACACCTCAGCAGAAGAGAAGTTAGATGCAGTTGACCATGATAAAAAATGTGAAGCAATGCCTCCTAAAAAGGTTAGTAATAAAACTGAAAAACAGAAGCTACCTTCACTGTTAGACTCAACCTCAAAGTTAAAAGTAAAGCATCAAGCTACAAAACGTCCTGCAAGTAAAACCAAGAAGACCACAGTTGCAAAGAAATTAGCGAAATCTGAAGAGGCAGCAGTATCTGGGGAGAAGATTCCTAATGAGACAAAGGATGAGGCAGAAATAAAAATCCTGAAAGAAGTGTCTGTACATTCTGATATAAGTGAGAATTCAAATGTACCAAGAAATAAGCCAGATAGTTTTGTTGAAGAGGAGAAGGAGAATAGACCAAATGATAGAGAACATGGTTTAGTGGATAGAACAAGTGTTGGAAATCAAACTATTAAATCTAGTGTTAAGCCAGCAAATATCATCAAATCTAAGAAAATGAAGCACAATTCATCTATATCTGATTTTAAAGCAAGAGCAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCTTCCAGAGAAAGGAGTATCAACAAGTAATCAAGAGTTTGAAAGGAAGGGTTTGCCGTGATTCTCATCAGTGGTCATATCAGGCAACACACTTCATAGCCCCAGACCCTATAAGGAGGACAGAGAAATTTTTTGCTGCTAGTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGTCAGGCAGGAAAATTATTGCCCGAGGAGCCTTATGAGTGGCACAAAAATGGTCTCACCGAGGATGGTGCCATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGTATTGTTGTATATGGCGATTGTTTTGCTCCACCTTTGGATACTCTGAAGCGTGCAGTCAAAGCTGGAGATGGAACAATATTAGCAACGTCCCCTCCTTATACCCGCTTCCTTGATAGTGGAGTTGACTATGCCTTAGTTAGCCCTGGCATGCCGCACGTTGATTTGTGGGTTCAAGAGTTCTTAAAACATGAGATACCATGTGTTGTACCGGACTACTTGGTGGAGTATGTATGCAAGCCTGGGTTATCCCTTGAGAGACATGTGTTGTATGGCACTCATGCTTGGGCAGATAGGTCATTTGCAAAACTTCAGAGTAAGGCAGAAGAGATTATTGAGGAGGTCATTCCTACTAAGGATTACAATGATGATGATGATGATGATGATGTAGCTTGCCAAGTATGTGGATCCCAGGAAAGAGGAGATGTCATGCTGATTTGTGGTGATGAAAGTGGATCTGTTGGCTGTGGAGTGGGTACACATATTGATTGCTGCAATCCTCCGCTCACAGTTGTTCCCGAGGAAGATTGGTTTTGTCCAAAATGCAGTGGCACCCAAAAATGCTCACAAAATCCCAGTAAAAGGAAAAAGGGTGCATTGTCTTCATAA 3597 0.4103 MLETNHSSRIFRGVHFALFGFDPHTESQIRFKLVNGGGIDVGKNSGSCTHVIVDKIAYDNSVCIAARNDGKTLVTALWVEHSADIGLPVDANSVMYRPLKDLDGIPGAKDLIVCLTGYLRQDREDIMTMVSLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKLATIKLVNHRWLEDCLKNWVLLPEDKYNKSGFELEMMAEEAKDSEDEAEDSKLGQSGGRNRSRSPLGSKFGTAVTHGLSKSLREEASNAIPDSTGPQVFPNADNGKDSSTTTGNKNNSDQDVNLHNIGNLNDLGITVNTNSSGQRPNLRDDTSETKKLSYTGSTSASADVLAHSDGKLGAPSYSRKNQKGFKFSRGLDECDGNNLETPSTKVEKTSEGIKSACVEGSGKETGVIQEDYGNNLLPQKRTNEAASTKSKSRKITANAKLSIERTQPANGKSQGLKVSSVVDEPPVSDGFLSADKDGKNNLDTCLISKSAASATNSVAFDKPVSRNAESSQCNNARQNSAKKAVQSLSKSKISGETDITGFEMGQSDNEAEKFNINTNLECPSPGKKSKDEGFAGLDNWDLINEESNKLIKKSPRKKSAAKRTLGSRPRKGVTAKLKSPVSLNKTMQQDEGVSSSSRSKEIATSCTKKHQASPEILDVNKLMEQEKVCEYAEDVGGKTDFLDDETEAPDDKCEYELGVAPDEELVHLSKKLDTSAEEKLDAVDHDKKCEAMPPKKVSNKTEKQKLPSLLDSTSKLKVKHQATKRPASKTKKTTVAKKLAKSEEAAVSGEKIPNETKDEAEIKILKEVSVHSDISENSNVPRNKPDSFVEEEKENRPNDREHGLVDRTSVGNQTIKSSVKPANIIKSKKMKHNSSISDFKARAKTEATCFILSGHRFQRKEYQQVIKSLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAASASGRWILKTDFLTASSQAGKLLPEEPYEWHKNGLTEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILATSPPYTRFLDSGVDYALVSPGMPHVDLWVQEFLKHEIPCVVPDYLVEYVCKPGLSLERHVLYGTHAWADRSFAKLQSKAEEIIEEVIPTKDYNDDDDDDDVACQVCGSQERGDVMLICGDESGSVGCGVGTHIDCCNPPLTVVPEEDWFCPKCSGTQKCSQNPSKRKKGALSS* 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2245 1198 SUPERFAMILY BRCT domain 879 966 IPR036420 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 722 784 - -
Tpr1g2245 1198 Gene3D BRCT domain 871 988 IPR036420 -
Tpr1g2245 1198 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Tpr1g2245 1198 ProSiteProfiles BRCT domain profile. 877 962 IPR001357 -
Tpr1g2245 1198 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Tpr1g2245 1198 Gene3D BRCT domain 99 221 IPR036420 -
Tpr1g2245 1198 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Tpr1g2245 1198 Gene3D BRCT domain 1 93 IPR036420 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 202 235 - -
Tpr1g2245 1198 ProSiteProfiles Zinc finger PHD-type profile. 1125 1181 IPR019787 -
Tpr1g2245 1198 SMART PHD_3 1127 1179 IPR001965 -
Tpr1g2245 1198 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 1 1178 IPR044254 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 299 332 - -
Tpr1g2245 1198 CDD PHD_RSF1 1127 1178 - -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 409 451 - -
Tpr1g2245 1198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1090 1194 IPR013083 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 749 765 - -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 248 286 - -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 609 641 - -
Tpr1g2245 1198 Pfam twin BRCT domain 111 175 IPR001357 -
Tpr1g2245 1198 CDD BRCT_TopBP1_rpt7 879 952 - -
Tpr1g2245 1198 Pfam BRCA1 C Terminus (BRCT) domain 882 947 IPR001357 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 250 286 - -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 815 835 - -
Tpr1g2245 1198 Pfam PHD-finger 1128 1179 IPR019787 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 766 784 - -
Tpr1g2245 1198 SUPERFAMILY FYVE/PHD zinc finger 1102 1179 IPR011011 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 409 447 - -
Tpr1g2245 1198 Gene3D BRCT domain 989 1089 IPR036420 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 802 835 - -
Tpr1g2245 1198 SMART BRCT_7 8 86 IPR001357 -
Tpr1g2245 1198 SMART BRCT_7 990 1077 IPR001357 -
Tpr1g2245 1198 SMART BRCT_7 106 183 IPR001357 -
Tpr1g2245 1198 SMART BRCT_7 871 952 IPR001357 -
Tpr1g2245 1198 SUPERFAMILY BRCT domain 8 92 IPR036420 -
Tpr1g2245 1198 MobiDBLite consensus disorder prediction 578 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2245 Tpr-Chr1 25196564 25203848 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2245 129 244 Core DNA Replication Machinery Family AT4G02110 63.793 8.54e-39 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g2245 BRCT 3.2e-08 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2245 K10728 - qsu:112006859 1007.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2245 1 25196564 25203848 Tpr1g2245 1 25196564 25203848 ECH