Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2239 ATGGGAAGAGCTCCTTGTTGTCAAAAAGTAGGGTTGAAAAGGGGAAGATGGACAACTGAAGAAGATGAGATCTTGACTAAATATATTCAGACCAATGGAGAAGGTTCTTGGAGGTCATTGCCCAAAAATGCAGGATTACTAAGGTGCGGGAAGAGTTGTAGATTAAGATGGATTAACTATTTGAGAACCGACCTTAAAAGAGGGAACATTTCTAAGGAAGAGGAAGACACAATTGTAAAGCTGCACACTTCTTATGGCAACAGGTGGTCCATGATAGCTAGCCACTTGCCAGGAAGAACCGACAATGAAATTAAAAACCATTGGAATTCTCACCTAAGCAGAAAAATTTACAGTTTCTCCAAAATATCCAACACTACGGAGCCAAAGATTATAGATATTCCTCCTCCTAAGCGTAAATGTGGCAGAACAAGTCGTTGGGCAATGAAGAAAAACAAAAACTACAAAAAACAAATCGTCACTAATACTAACAAAACCGTCACTAATATTGAAGAAACTGTCACTATTGAACCTGAAGTTCAAATTCCACGGACACCGTCACTAGAAAATGAGGTTGAGGTGGTAAAAACAACATATGAAGAAGAGAAAGAAGAAACTTGTGATTATGAATCATGTGACGACATCATAGTACTGAGTGAATTATTAGATAGCATTAATGAAGATAGTGGGTTGGAAAATTGTTTGGTGAAAACATGTGGTACTGTTTCAAATTTAAGTGAAGAGAGAGAAATGGTGGGTGATATGGTTATGGGTGAAGAGAATGATGTTGATGTGTGTCTTAAAAATCATAAATTGGATTCATGTGATAGTAGTGTGAATAATTACCAAAGCAGCTCTAACAATGGGGAAATTAGTGATGAATGGACCTCAATGGGATTAAATTTTGATCATGATGATAAATGGAATTGGGAAAGTGTGATGGAGTTTAATATTTTTGATGATGATGATAATGATGATAGTTTTAGGGAGCATAAAGAAAAGATTTTGAAATTGTTGTATGAAGATGATGATAATAAGATGTTGGGAGAGATTGATCCTCAGAAACAAAATGATTTGATTGCTTGGTTTCTCTCTTGA 1095 0.3589 MGRAPCCQKVGLKRGRWTTEEDEILTKYIQTNGEGSWRSLPKNAGLLRCGKSCRLRWINYLRTDLKRGNISKEEEDTIVKLHTSYGNRWSMIASHLPGRTDNEIKNHWNSHLSRKIYSFSKISNTTEPKIIDIPPPKRKCGRTSRWAMKKNKNYKKQIVTNTNKTVTNIEETVTIEPEVQIPRTPSLENEVEVVKTTYEEEKEETCDYESCDDIIVLSELLDSINEDSGLENCLVKTCGTVSNLSEEREMVGDMVMGEENDVDVCLKNHKLDSCDSSVNNYQSSSNNGEISDEWTSMGLNFDHDDKWNWESVMEFNIFDDDDNDDSFREHKEKILKLLYEDDDNKMLGEIDPQKQNDLIAWFLS* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2239 364 Gene3D - 71 116 - -
Tpr1g2239 364 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tpr1g2239 364 CDD SANT 16 61 IPR001005 -
Tpr1g2239 364 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tpr1g2239 364 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tpr1g2239 364 PANTHER MYB TRANSCRIPTION FACTOR 2 316 - -
Tpr1g2239 364 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tpr1g2239 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tpr1g2239 364 Gene3D - 11 67 - -
Tpr1g2239 364 CDD SANT 71 112 IPR001005 -
Tpr1g2239 364 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 316 - -
Tpr1g2239 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tpr1g2239 364 SMART sant 13 63 IPR001005 -
Tpr1g2239 364 SMART sant 66 114 IPR001005 -
Tpr1g2239 364 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2239 Tpr-Chr1 25147778 25152001 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2239 1 162 MYB Transcription Factor Family AT5G49330 65.363 2.09e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tpr1g2239 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2239 K09422 - gmx:100814275 313.538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2239 1 25147778 25152001 Tpr1g2239 1 25147778 25152001 ECH
Tpr6g0481 6 3979786 3984749 Tpr1g2239 1 25147778 25152001 PCT