Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2230 ATGAAGGAAGAAGAAGAATCAACGGTTAAGATGGAGTGGTTAACTTGCATTGATTCAACAACTCTCTCTCACTCTGAACTTCAAGCACTTTCTCTCTCTTCTCTCTCTTCCTTCGACCTAAAATCTACGCGCCAAATCGTCACTCCCAAAATCGATCCCTCAACTTTCAACCACAGCGCCGGTTCTCACCGTCAAACCTACTCCCGATCTCACCGTCGTTGTCGTGCACCGCCACTTCTTCCAACTCCTGTTCTTCCCTCCGACCACCGTATCATCGTTGATTACCTCAAACAGTTTATTAGAGAAGATCCGAAGTTCGATCAGGTTGAGCTTCTTCAGCCTGTAGTTCCTTCAATTTCGCCGCCGGTGATATTTTCCGGTGAGGTGAGGAAAAGGAAGAGAGGGAGGAAACCTAAAATGAAGGTGCATTTGGATGACTGTTATAGAGGGATGGAGATTGTGAACAAGAATGGTGTTGCTGTTGATTTGAATGTGTTGTCGATGGTGGAGCATCCGTTTGAGGCGGAGATTGCGAGAAGGACGGAGGGTTTAAGTAAGGAAGATGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGTCAGTGGGGAAGTAGGAGGAGGAAGAGGAGGATTGTTGATGCTGCTGATTTTGGAGATGTGTTACCTCTTGGTTGGAAGCTTTTGCTTAGTTTGAAGAGGAAAGATGGTCGTGCCTGGATCTATTGCCGGAGATATATAAGCCCTAGTGGACAGCAGTTTGTGTCTTGCAAAGAAGTTTCTTCCTATTTGCAGTCTCGTTTTGGTCACTCTGATTTACAGTTACAAATCAGTCATAGGAGTGAAAACATACTTCAAGAACAGAGAGTGACTACTGAAAATTCTGCAGGTGTTGCTCACGAGGAGCAGGATCAACGGCAGATTGTTGCCACTAACTCGGATGTGTCTGGTTTGTCCGTCTCTAATGAACGGTTGAAGGAAATGTCCTTGTTGGAGATGGAGAACCTTGCAGATGTGCAAATACATGATCTGTTTGAATGTCACAAGTGCAACATGACCTTTGATGAGAAGGATGCGTACTTGGAGCACCTGTTGTCTATTCATCAGAAGACGACGAGGCGGTATCGACTTGGTTCATCTGTTTCAGATGGAGTTATAATTAAAGATGGGAAGTTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAGCGTCGCTACAATAGTCATGTTGGGATACATGTAAGGAATTATTTGAGGAAAGCTGAAGATTTGCCGGGTCAGCCTAATGTCTTGAGAGCAGAAGAGTCTCCAGTCACAGATGAGATGCCTTCAAGGATCTCTAAGATGGATGCCCTCATCGAAATTGCTCAAAACTCTATTGTGGAGGATTCTGTCATGGAACCATGTTCCTCTAAACTGAATACGATTCATGTTTCAGAAATTGCAGCTGGTGACTTAGATGAAGACATAAACGTCGAGTCTCTGGTCAGTGAACAGCAAATGGAAGAGAGCTTGATTGGCCCAAATGTAGTTCGCGATTTAAATCAGCAAGATAGTCCTCGTTTACCCATGGGTGGAACAATAGAGAAAATTGACAACGATAACCGAGTTATTAATGCAAAGACGTCTAGTTTTCTAGATAACACAGGCTTGTTATCTGTGAATAATAAAAATGTTGATGCACCTGATACTTCTAAAGGAAAAGGTGATACGGCGCTGACTGTTGAGGGATTTGATCATTCTGGGATTGATCTGCAAGGAGTTTCTCAAGTCCCGTTGCTTCCTTCATTTGGGAATCACATGAAACCTGGATATGAGAAGAGTGAAAATTCTGGTTGCACTAATACTAAGGGGGATCTTAGACTTGGCGAAAACAATAGTAATAAAAGTGACTTGAAAATTGGTTTAGATGGCTGCAAGGATGTACCCGGTGTTGCTAATGTTCAAGTGACAGCAATGCTAACTTCTAAAGAAAATGTGATCCAATCTATGGTTTCTAACCCCTCTGTATCCCCAGAACAATCTATGGATTCTTTTTCTGCATTTAGCTCAGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATTGGTTCTCTTGAGTATGATTTTGCAAGTGTTCAAGATGTGTCAGCTGAATTGGCAAATAACATAGTGGTGCAAGGGACATGTGCATCACAAGAAGTTATGTTAAATGTGGATGACAATAATCAGCTCACAACCACGTGTGTATGGTGTGGAATAGAGTTCAGTTTGCAAGGCAAAAATATCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATTTTTAGACTGCTGA 2325 0.4271 MKEEEESTVKMEWLTCIDSTTLSHSELQALSLSSLSSFDLKSTRQIVTPKIDPSTFNHSAGSHRQTYSRSHRRCRAPPLLPTPVLPSDHRIIVDYLKQFIREDPKFDQVELLQPVVPSISPPVIFSGEVRKRKRGRKPKMKVHLDDCYRGMEIVNKNGVAVDLNVLSMVEHPFEAEIARRTEGLSKEDELLGFLSDLVGQWGSRRRKRRIVDAADFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPSGQQFVSCKEVSSYLQSRFGHSDLQLQISHRSENILQEQRVTTENSAGVAHEEQDQRQIVATNSDVSGLSVSNERLKEMSLLEMENLADVQIHDLFECHKCNMTFDEKDAYLEHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRKAEDLPGQPNVLRAEESPVTDEMPSRISKMDALIEIAQNSIVEDSVMEPCSSKLNTIHVSEIAAGDLDEDINVESLVSEQQMEESLIGPNVVRDLNQQDSPRLPMGGTIEKIDNDNRVINAKTSSFLDNTGLLSVNNKNVDAPDTSKGKGDTALTVEGFDHSGIDLQGVSQVPLLPSFGNHMKPGYEKSENSGCTNTKGDLRLGENNSNKSDLKIGLDGCKDVPGVANVQVTAMLTSKENVIQSMVSNPSVSPEQSMDSFSAFSSDKGFQELRLEDIGSLEYDFASVQDVSAELANNIVVQGTCASQEVMLNVDDNNQLTTTCVWCGIEFSLQGKNIWSNQCVGQWITKCWPFLDC* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2230 774 ProSiteProfiles Zinc finger C2H2 type domain profile. 390 417 IPR013087 -
Tpr1g2230 774 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 6 750 IPR037472 -
Tpr1g2230 774 Pfam Methyl-CpG binding domain 219 265 IPR001739 GO:0003677
Tpr1g2230 774 Gene3D Classic Zinc Finger 317 417 - -
Tpr1g2230 774 SMART c2h2final6 390 412 IPR013087 -
Tpr1g2230 774 SMART c2h2final6 343 366 IPR013087 -
Tpr1g2230 774 SUPERFAMILY DNA-binding domain 216 271 IPR016177 GO:0003677
Tpr1g2230 774 ProSiteProfiles Zinc finger C2H2 type domain profile. 343 371 IPR013087 -
Tpr1g2230 774 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 210 282 IPR001739 GO:0003677
Tpr1g2230 774 ProSitePatterns Zinc finger C2H2 type domain signature. 345 366 IPR013087 -
Tpr1g2230 774 Gene3D - 200 309 - -
Tpr1g2230 774 ProSitePatterns Zinc finger C2H2 type domain signature. 392 412 IPR013087 -
Tpr1g2230 774 MobiDBLite consensus disorder prediction 52 75 - -
Tpr1g2230 774 PANTHER METHYL-CPG-BINDING DOMAIN PROTEIN 6 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2230 Tpr-Chr1 25019735 25024332 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2230 MBD 9.3e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2230 - - lang:109329666 848.195