Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2176 ATGACTTCTGATGAAATCCGTGCTTTGGAATTTGGTACTGTTGATGAAGCATGTGAATTTTATTATCGGTATGGTAAATCTAAAGGTTTTGCCATTAGGAAAAGTGAAATTAGGAGAAGAGGCCCTGAAGGTAGTAAAAAAATAGTAATGAGGCAGTTTGTATGCAATAAACATGGGTTAAGAGCGAAGAAATACTTGTGCAAGATAGATAGGAAAAGAGAGCACAGACGTTTGACCCGTACTAATTGCGCAGCTAGGCTTCATGTGCACTATAAACCCAAAAAGGATAGGTATGTAGTGTCAATTTTTGAAGAGGGTCATAATCATGAATTAACCCCGTCTAGGTATGTGCACTTACACCCCACTTATCGGCAAATTTCTGAAACAGATAGAGCTCAAATTGATGGTCTTCAGTCACGTGGAATTAGAACATGTCATATAATGGGATACATGGTTGCTCAGAAGGGTGGATATTCTAGTGTTGGGTTTACAAAGAAAGATCTTTACAATTATTTTGATAAAAAAATGCGTGACATTATTAAAGATGGTGATGTTGCCGCTTCTCTAAATTATCTAAATGTAAAAACATCTACTGATCCCATGCTCTATGCTGAATATGCCGTCAACAACAATGATGGACGAATGAAGTCTATTTTTTGGGCTGATGGGAGTAGTAGATCTGACTATTTTTGTTTTGGTGATGTGCTTGCCTTCGACACAACTTACCAAAAGAACAAATACAACTACCCATTGGTTATATTTTCAGGGTGTAACCACCACTCCCAGATAGTTATTTTTGGTGCTGCAATAGTATCGGATGAAACGACAGAGACATATAAGTGGGTGTTGAAATGTTTTTTAGAGTGCATGGAAAAGAAACACCCAAAAGCAGTGGTGACAGATGGAGATGAGGCTATGAGGGAGGCTATAAAACATGTTTTTCCTAATGCGACCCATCAGTTATGTTCTTGGCATTTGAATAAGAATGCAAGTGATAATGTAAAGAATTCAGAATTTTTGGCAGGTTTTAAAAAAGCCATGTACTCAAATATTACAAAGGATGAATTTGAAGAGTTTTGGTCAGAGCTGATTAAAGAAAATAAACTTGAACGAAATCCTTGGGTTGCCAAAACGTATGCGAACAAGTCAATGTGGGCAACTGCATATCTACGTGATAAGTTTTTTGGATGTTTTAGAACAACGTCTCAATGTGAAGCTGTTAATGCAATAATCAAGAGTTATACCAGGAAGAAATGCTCCATTTTTGAATTTATACACAATTTTGAGCAGGCTCTGGGGGACTACAGAAACAATGAAGTGGTTGCTGATTTTAAATCAAAGTGTACAGAACCTGTGTTGACAACTCACCTGCATTTGATTGAGAGTGATGCCGCTAAAGTTTATACGGCAGAGATTTTCATTGAAGTTAAAGATCAAATTATGAAGGTTGGTGCATTGATTGTTAAGGATAAACATGAAGTTGGGGATACGAAGATTTATACATTGAAAAAGTATTGTCAGGATAATTATGAAAGAGAAGTTGTTTATGATGGTTCAACATTTTAA 1566 0.3646 MTSDEIRALEFGTVDEACEFYYRYGKSKGFAIRKSEIRRRGPEGSKKIVMRQFVCNKHGLRAKKYLCKIDRKREHRRLTRTNCAARLHVHYKPKKDRYVVSIFEEGHNHELTPSRYVHLHPTYRQISETDRAQIDGLQSRGIRTCHIMGYMVAQKGGYSSVGFTKKDLYNYFDKKMRDIIKDGDVAASLNYLNVKTSTDPMLYAEYAVNNNDGRMKSIFWADGSSRSDYFCFGDVLAFDTTYQKNKYNYPLVIFSGCNHHSQIVIFGAAIVSDETTETYKWVLKCFLECMEKKHPKAVVTDGDEAMREAIKHVFPNATHQLCSWHLNKNASDNVKNSEFLAGFKKAMYSNITKDEFEEFWSELIKENKLERNPWVAKTYANKSMWATAYLRDKFFGCFRTTSQCEAVNAIIKSYTRKKCSIFEFIHNFEQALGDYRNNEVVADFKSKCTEPVLTTHLHLIESDAAKVYTAEIFIEVKDQIMKVGALIVKDKHEVGDTKIYTLKKYCQDNYEREVVYDGSTF* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2176 521 Pfam MULE transposase domain 235 329 IPR018289 -
Tpr1g2176 521 Pfam FAR1 DNA-binding domain 19 112 IPR004330 -
Tpr1g2176 521 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 491 IPR031052 GO:0006355
Tpr1g2176 521 PANTHER OS02G0262500 PROTEIN 7 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2176 Tpr-Chr1 23526791 23535932 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g2176 MULE 5.2e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2176 - - ccaj:109792835 711.449