Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2158 ATGATGAAGAGACAGAGACAAAACGAAGAAAAAGAGAGCATAGATTTAGCAACAAATCTAATGCTACTCTCTTCTCATCGTACCCAAAAAAACAAAAAAACATTATTTTCTCAATTAGTTGAGTTTGAGTGCAAAACATGTAACCGCAAATTTTCATCTTTTCAAGCACTAGGTGGTCACAGGGCAAGTCACAAGAAGCTGAAAATCGATTCAGAAGAAGCAAAGAAAGTGAATATTAATAACAATAAGCCCAAAATGCATGAGTGTTCAATTTGTGGACAAGAATTCAAATTGGGTCAAGCTTTGGGTGGACACATGAGAAGACATAGAATTAATAATGAAGGATCTTCAATAAATTATCAAGTGATTACAAAATCTTCTCCTGTTTTGAAAAGATCGAATAGTAAGAGGATTATTATGTGCTTGGAATTGGACTTGAATTTGACACCTTTGGAAAATGATTTGAAGTTGTTGTTTGGAAATAAGGCACCTAGAGTAGATCTTTCGTTGTTCTGA 516 0.3391 MMKRQRQNEEKESIDLATNLMLLSSHRTQKNKKTLFSQLVEFECKTCNRKFSSFQALGGHRASHKKLKIDSEEAKKVNINNNKPKMHECSICGQEFKLGQALGGHMRRHRINNEGSSINYQVITKSSPVLKRSNSKRIIMCLELDLNLTPLENDLKLLFGNKAPRVDLSLF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2158 171 Gene3D Classic Zinc Finger 39 109 - -
Tpr1g2158 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Tpr1g2158 171 SUPERFAMILY beta-beta-alpha zinc fingers 42 109 IPR036236 -
Tpr1g2158 171 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Tpr1g2158 171 Pfam C2H2-type zinc finger 42 66 - -
Tpr1g2158 171 Pfam C2H2-type zinc finger 87 110 - -
Tpr1g2158 171 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Tpr1g2158 171 SMART c2h2final6 87 109 IPR013087 -
Tpr1g2158 171 SMART c2h2final6 42 64 IPR013087 -
Tpr1g2158 171 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Tpr1g2158 171 PANTHER ZINC FINGER PROTEIN ZAT5 2 165 - -
Tpr1g2158 171 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2158 Tpr-Chr1 22909518 22910073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2158 2 168 C2H2 Transcription Factor Family AT2G37430 49.724 3.32e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2158 zf-C2H2_6 2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2158 - - aprc:113870747 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2158 1 22909518 22910073 Tpr1g2158 1 22909518 22910073 ECH