Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2150 ATGGGTCTTAGAGATGTCGGTGCTTCACTTCCACCTGGGTTTCGGTTTTATCCAAGTGATGAAGAGTTGGTTCTTCATTACCTTTATAAAAAGATCACAAATGAGGATGTTCTCAAAGGTACCTTGGAGGAAATTGACTTGCATACATGCGAGCCATGGCAACTTCCTGAGGTTGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCAACTGGCTTTAGAACCAATAGAGCTACGACATCTGGCTATTGGAAAGCGACAGGGAAAGATCGAACGGTGTTTGATCCAATGAGTGGTGAGGTTGTAGGAATGAGGAAAACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATAAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAGACCCCACATATGCCACCTAAGGAAGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAAACAGAAAATAGTACCAAATTAAGCCCACAAGACATGTATGAAACAATAGCACCATCATTAACCAACCAAACCATGCCAATTGGTTATAACCAATTTGCTTCTTTCTCATCCTCAATGACAACCCATCATTGTCATTCAAATGAGAACCAAAATAATTCTTTGATGAATCTACGTCAATTTTCTAAAGATGCAAATACCAATTGTAGTAGTGTAACTCAAATTAGTCCTAAATGTGATGATGGATATGGATTTTTGTGGGACATGGATTTAGAAGATCATCATGATGGTGTCTCCTCATCAAACTTAGAAGGAATGAGATTCGAAGTTGATAATAATAATTGCATGGTCTTGCTATAA 831 0.3875 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVFDPMSGEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTENSTKLSPQDMYETIAPSLTNQTMPIGYNQFASFSSSMTTHHCHSNENQNNSLMNLRQFSKDANTNCSSVTQISPKCDDGYGFLWDMDLEDHHDGVSSSNLEGMRFEVDNNNCMVLL* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2150 276 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Tpr1g2150 276 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Tpr1g2150 276 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Tpr1g2150 276 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Tpr1g2150 276 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 270 - -
Tpr1g2150 276 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2150 Tpr-Chr1 22698123 22703410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2150 9 156 NAC Transcription Factor Family AT1G76420 60.265 4.19e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tpr1g2150 NAM 2.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2150 - - ccaj:109788642 464.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2150 1 22698123 22703410 Tpr1g2150 1 22698123 22703410 ECH
Tpr6g3315 6 35713702 35721864 Tpr1g2150 1 22698123 22703410 PCT