Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2145 ATGATGGAAATTGAGTTTGGAAGTGGATGGATAGCTCATCAGCACTGTAAGGACGGTAAGGTTGGTGTGATCAGAAATCTGGTCCACTCATCCCCCAATATAAAGAAAGAAGTTATTCTTGTTGGAGCCTTGCAACCTGTTATTGGATTACTTAGCTCCTGTTGCTCAAAAAGTCAGAGAGAAGCAGCATTGTTACTTGGACAGTTTGCAGTGACCGATTCAGACTGCAAGGTTCACATTGTACAAAGAGGTGTTGTATGGCCTTCGATAGATATGCTTCAGTCTCCCGATGTTCAGCTCAAAGAAATGTCTGCGTTTGCATTGGGAAGATTGGCACAGGACACACATAACCAAGCTGGTATTGAACACACTGGCGGCTTAATGCCATTGCTGAAGCTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGAGAATGAGGTCACCATAAGCCAATTTTATGTAATGGATAAACTAACTCATGCTCATGAGAGATACAAACTTTATTGA 537 0.419 MMEIEFGSGWIAHQHCKDGKVGVIRNLVHSSPNIKKEVILVGALQPVIGLLSSCCSKSQREAALLLGQFAVTDSDCKVHIVQRGVVWPSIDMLQSPDVQLKEMSAFALGRLAQDTHNQAGIEHTGGLMPLLKLLDSKNGSLQHNAAFALYGLAENEVTISQFYVMDKLTHAHERYKLY* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2145 178 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2-LIKE 20 161 - -
Tpr1g2145 178 SUPERFAMILY ARM repeat 22 157 IPR016024 -
Tpr1g2145 178 SMART arm_5 73 113 IPR000225 GO:0005515
Tpr1g2145 178 SMART arm_5 114 154 IPR000225 GO:0005515
Tpr1g2145 178 SMART arm_5 31 71 IPR000225 GO:0005515
Tpr1g2145 178 Gene3D - 16 171 IPR011989 -
Tpr1g2145 178 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 20 161 IPR044282 -
Tpr1g2145 178 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 125 156 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2145 Tpr-Chr1 22617652 22621912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2145 77 153 U-box Gene Family AT5G40140 40.260 3.18e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2145 - - mnt:21395569 246.514