Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2143 ATGCATATAGGTCAAACGGATACAGCTTCTGTGAAATGTCTGATCAACAGCATTTCTCGATTCATTCATCTGGTTTCTTGCCAAACGGTGAAACCTATGCCCTTCCAGAAAATCTGTAATAATATGGTCGGCGTGTTAAAGCGTTTGAAGCCAGTGCTTGATGACATTATGGACTACAAAATTCCTTTACATGAAAATTTATGTAAAGTATGTGAAGAATTGGATATTGGAGTTAATGAAGCAAGAGATTTCATAGAAAAATGGGGTTCAAAGATGAGCAAGATTCACAGTGTTCTTCAAAGTGGCACATTGTTGATCAAGTTACAGAGCACTTCACTTGACATTTGTCACATGATAGTTAAATCCTTACAGTCACCTCCATCTGCATCGGTTTTGGCTAATCTACAGCACTATATCCAAGAACTTCAGTGTCTCAAGAAGGAAACGGCAATGATCTATATAGAAAAGGCGCTGAGAAACCAAAGAGATAATATTGAACCTTGCAATGAGAATCTAAGGGAAATTATTGAGTTACTTAAATTGACATCAACTCAGGAGCTCTTGAAGGAAACTATTGCTGTGGAAAAGGAAAGATTGAACGCAGAAGGACATAAAATGATAGGGGACTTGGAAGAAATCAATGAAATTGTGAATCTTGTTCGCAACTTACGTGATTATGTGATGAAAACCGAGTGCTTTGCAGTCAAAAGTGGCGTCTCTTTCCCTCCGTACTTTCGCTGTCCTTTATCATTGGAACTCATGGTGGATCCTGTTATTGTGGCTTCCGGTCAAACATACGAGAGGCAATCTATCCAAAAGTGGCTTGATAATGGGATGACTGTTTGTCCAAAGACTCGTCAACGACTTACTCATACAAATCTCGTTCCTAATTATACTGTTAAAGCTATGGTAGCAACTTGGTGCGAGGAAAATAACACCAATCATGCAAGTAACACCAAGTACAATAATTCTTCCCATAAAACAGTCCCCTCTGATCATTTATTGTCTCAAGAATTACCCAGTGGCAATTCAATTTCAAGATCATGTCTTCAAACTGGAAATGCATTTGAAGAACGAAAGGATGATAGCTCTTTCAGATCAAATGGAGAATGCAATGGATGCCAGAATGTAGAAATAGAAAAGTGGGAGCTACAATCCATTCACAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTAGCGATTGTCTACTTGCAGTTTCAAAAGATGTATCAAGGATGTCCGATAAACATCAAAATATGAAGGGTTCGTCCGTAGATGCAGGGGGGATGGAAAATCGAAAAAATAATAACAGTAATACTACTAATAGTCATTCAAGAGTTGATTCACATAATGTGTCAAACTCAGGATTTAATGAATTGACCACCTCGTCTCATGTCAATAAATTGATCGAAGACCTCCAAAGCCAATCAATTGAAGTGAAAACTACTGCCGCAGAAGAATTGCGGCTCCTTACAAGGCATAACACGGAAAACCGTATCATTGTAGGGAAGTGTGGGGCTGTCACGCCTTTACTTTCGCTTCTATATTCAGACGGGAAAGTAACACAAGAGCATGCCGTAACAACTCTTCTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCTACAGAACCCCTTATCCATGTTTTGAAGGCAGGAAATGACGGTGCCAAGGAGAATTCCGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACAGTAAAGCAAAAATCGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGAACTTCTTGCCTCAGGCGCACTTAGAGGAAAGAAGGATGCAGCTACTGCTTTATATAGCCTATCAATATTTCACGATAATAAAGCTCGAATAGTTCAAGCTGGAGCTGTGAAATTTCTGGTCCGGTTAATAGATCCTGCTGATGGAATGGTTGATAAAGCTGTTGCTCTTCTGTCGAACCTGTCGACAATTGCAGAGGGCAGGTTAGAAATTGCAAGAGAAGGCGGCATCCCTTCATTAGTTGAAATTGTCGAATCGGGTTCTCAAAGAGGAAAGGAAAATGCCGCCTGCATTCTCTTACAATTATGCCTTCATAGTTCCAGGTTTTGTACACTTGTTTTACAAGAAGGAGCTGTACCTCCTCTGGTTGCATTATCTCAATCTGGTACACCAAGGGCAAAAGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGTGAAGGGAAAATCATGA 2259 0.4019 MHIGQTDTASVKCLINSISRFIHLVSCQTVKPMPFQKICNNMVGVLKRLKPVLDDIMDYKIPLHENLCKVCEELDIGVNEARDFIEKWGSKMSKIHSVLQSGTLLIKLQSTSLDICHMIVKSLQSPPSASVLANLQHYIQELQCLKKETAMIYIEKALRNQRDNIEPCNENLREIIELLKLTSTQELLKETIAVEKERLNAEGHKMIGDLEEINEIVNLVRNLRDYVMKTECFAVKSGVSFPPYFRCPLSLELMVDPVIVASGQTYERQSIQKWLDNGMTVCPKTRQRLTHTNLVPNYTVKAMVATWCEENNTNHASNTKYNNSSHKTVPSDHLLSQELPSGNSISRSCLQTGNAFEERKDDSSFRSNGECNGCQNVEIEKWELQSIHSRSESFSSSISSSDCLLAVSKDVSRMSDKHQNMKGSSVDAGGMENRKNNNSNTTNSHSRVDSHNVSNSGFNELTTSSHVNKLIEDLQSQSIEVKTTAAEELRLLTRHNTENRIIVGKCGAVTPLLSLLYSDGKVTQEHAVTTLLNLSINEDNKALIMEAGATEPLIHVLKAGNDGAKENSAAALFSLSVMENSKAKIGRSGAVKALVELLASGALRGKKDAATALYSLSIFHDNKARIVQAGAVKFLVRLIDPADGMVDKAVALLSNLSTIAEGRLEIAREGGIPSLVEIVESGSQRGKENAACILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATVKGKS* 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2143 752 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 589 631 IPR000225 GO:0005515
Tpr1g2143 752 SMART arm_5 537 577 IPR000225 GO:0005515
Tpr1g2143 752 SMART arm_5 578 618 IPR000225 GO:0005515
Tpr1g2143 752 SMART arm_5 619 658 IPR000225 GO:0005515
Tpr1g2143 752 SMART arm_5 659 699 IPR000225 GO:0005515
Tpr1g2143 752 SMART arm_5 496 536 IPR000225 GO:0005515
Tpr1g2143 752 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 234 327 IPR013083 -
Tpr1g2143 752 Pfam U-box domain 242 312 IPR003613 GO:0004842|GO:0016567
Tpr1g2143 752 Gene3D - 542 749 IPR011989 -
Tpr1g2143 752 SUPERFAMILY RING/U-box 240 313 - -
Tpr1g2143 752 Gene3D - 384 541 IPR011989 -
Tpr1g2143 752 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 507 549 IPR000225 GO:0005515
Tpr1g2143 752 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Tpr1g2143 752 PANTHER U BOX DOMAIN-CONTAINING 430 747 - -
Tpr1g2143 752 PANTHER U BOX DOMAIN-CONTAINING 11 362 - -
Tpr1g2143 752 SUPERFAMILY ARM repeat 458 739 IPR016024 -
Tpr1g2143 752 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 430 747 - -
Tpr1g2143 752 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 362 - -
Tpr1g2143 752 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Tpr1g2143 752 Pfam Armadillo/beta-catenin-like repeat 583 617 IPR000225 GO:0005515
Tpr1g2143 752 Pfam Armadillo/beta-catenin-like repeat 537 576 IPR000225 GO:0005515
Tpr1g2143 752 Pfam Armadillo/beta-catenin-like repeat 496 535 IPR000225 GO:0005515
Tpr1g2143 752 MobiDBLite consensus disorder prediction 412 455 - -
Tpr1g2143 752 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 630 671 IPR000225 GO:0005515
Tpr1g2143 752 MobiDBLite consensus disorder prediction 430 455 - -
Tpr1g2143 752 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2143 Tpr-Chr1 22576085 22580673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2143 7 752 U-box Gene Family AT3G54790 52.918 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2143 - - mtr:MTR_1g069845 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2143 1 22576085 22580673 Tpr1g2143 1 22576085 22580673 ECH