Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2139 ATGCCTTCGATACTCTCTCCTGGCAAAATCCACAAACTCCAGATCGAGAATTTCAAATCCTACAAGGGTTTCCAAGATATCGGTCCTTTCTATGATTTCACCGCCATTATTGGACCTAACGGTTCCGGCAAGTCCAACCTTATGGACGCTATTAGCTTCGTTCTTGGCGTCAGAACCGGCCAACTCCGTGGTGCTCAACTCAAAGATCTCATCTATGCATTCGATGATCGAGATAAAGAACAGAAAGGAAGAAGAGCTTTCGTTCGTTTGATTTATCGACTTGCGAATGATTCTGAGCTCAAATTCACTAGAACCATTACTTCTGCCGGAGCAAGTGAGTATCGTATTGATGATAGTGTTGTTACTTGGGATGTTTATAATGCTAAACTCAAATCGTTAGGTATTCTTGTTAAGGCTCGCAATTTCTTAGTCTTTCAGGGTGATGTGGAATCTATTGCGTCCAAGAACCCGAAGGAGCTTACTGGACTTATTGAGCAGATATCTGGATCTGATGAACTTAAGAGAGACTATGAGCAGTTTGAAGAAGAAAAAGCTACTGCTGAGGAGAAATCGGCACTTGTTTATCAGAAGAAAAAGACAATGGTTATGGAGAGAAAGCAGAAGAAAGAACAGAAGGAAGAGGCAGAGAAACATCTTCGACTGCAAGATCAATTGAAATCTATGAAGAAGGAACATTTCTTGTGGCAGTTGTACAATATAGAAAATGATATTGTTAAAACAACTGAGGAACTTGAAACTGATAAAAGAAGTCGTGAAGGTGTTATTGAAGAACTAGAAAATTATGAACATGAAGCCAGTAAAAAGAAAAAAGAGCAAGCCAAATATCTGAAAGAAGTTATGCTACGTGAGAAGAAAATAACTGAGAAAAGCAACAAACTTGACAAGACTCAACCTGAGCTTCTTAAGTTAAAGGAGGAAATGACTCGTATTAATACAAAAATTAAAAAAGGGAAGAAGGAGCTTAACAAAAAAAAGGAAGAACAAAGGAGGCATGCCGGTGACATAGCAGGGCTAGAGAGTGGTATTCAGGATCTTACAGCGAAGATGGCAGACCTACAGGAGAAGAGTAGAAATGTCGGTGATCAGCTCAAGTTAGATGGCAATGACTTGGAAGAATATTTTAGAATAAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGATAGGCAGCAACATGCTGATAGTGAAGTTCAAAATAATTTGGAAGAAAATCTTCAACAATTAAAAAACCGGGAGTCTGAGCTGGATTCACAGGAAAAACAGATGCGAGAAAGGCTTGAAAAAATTCGGGATAATTATGCAAAAAATAAGGATACCGTTGAAAACTTGAATAAAGAACTGCGTGAGATGAAAGAAAAACATAATGAAGCCAAGAGAAATTATGATAACTTGAAGATGAAAATTGGCGAAGTAGAGAATAATCTCCGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGCTTGTTTCAAGGAGTCCATGGTCGCATGACTGAACTTTGTAGGCCAACGCAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCAGTTGTTGTCGAGGATGAAAAGACTGGGAAGGAATGCATCAAGTATTTAAAAGAGCAAAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCTATTCGTGTGAAGCAAATAATGGAAAGGTTACGCTCATTAGGGGGTACATCAAAACTGGTTTTTGATGTGATTCAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTCGAGGAAGCCAAAATTTTAAGCTGGAGTGGGGAGAGATTTAAAGTTGTTACCGTGGATGGAATTTTGCTGACGAAGTCCGGCACAATGACCGGTGGCACTAGTGGTGGAATGGAAGCAAGATCTAAACAGTGGGATGACAAGAAATTTGAAGCATGTCTTAAGCAGAAAGAGCAGTATGAATCAGAGTTGGAACAGCTTGGATCAATAAGGGATATGCACCTTAAAGAGTCTGAAACAGCGGGGAAAAAGAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGGGAAGCATTGAAGACAAACTTTCAAATTTTAGTCTCGAAAAGGGGACCATCAAAGAAGAAATTAAACGTATTAGTCCAGAACTGGAGAAGTTAAGAGATGCTGTTGAAAAGAGGAATAAACAATTACGCACTCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAGACTTCAGCAAGTCAGTTGGGGTAGCAAACATTCGCGAGTATGAAGAAAATCGACTCAAGGATGCTCAAACTGTAGCAGAAGAGAGGCTGAACCTGAGTAGCCAACTTTCAAAATTAAAATATCAGTTGGAGTATGAGCAAAATCGGGACATGAATTCTCGAATTCAAGAATTGGAATCTTCTGTAAGTGCTTTAGAGAATGATTTAGAACATGTACAGAACAAAGAGGATGAAGCAATGTTAGCAGCAGAGAAAGCTACTGAGGAGATGAATCAATTGAAGGATGAAGCTAAAGAGTGGAAATCAAAGTCAGATGATTGTGAAAAGGAAATCCATGAATGGAAGAAGCAGGCTTCTACGTCCACAACAAAGTTATCCAAACTTAATCGTGGGATAAACTCAAAGGAGACACAGATTGAGCAATTGATGGGGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTAGAGCAGATTAGCCTTCCAATCATATCAGATCCCATGGATACTGATAGCTCAACACCGGGTCCAGTTTTTGACTTCGATAAGCTTAGTAGGACACTAAAAGATAAACACTCTGACAGGGATAAAATAGAGGTAGAATTTAAGACAAAAATGGATGCATTGATATCTGAGATAGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAGTATGAGGCTCTGCTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGATGCTGTCAGGAAAGAAGAACAAGAAAAAGCAAAAAGATTCAATGATGTAAAGCAGAAGAGATATGATTTGTTCATGGATGCTTTCAACCATATAGCTGGTAATATCGATAAAATTTACAAACAACTTACAAAGAGCAACACTCATCCTCTCGGTGGAACCGCATACTTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACAAAGCGGTTCCGCGACATGGAACAACTATCTGGTGGTGAAAAGACTGTTGCTGCGCTTGCGTTGCTATTCTCCATCCATAGTTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTTGCTGGCTTTATTCGATCAAAATCTTGTGAAGGAGCTAGGGTTAATCAGGACACTGATGGCGGATGTGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTACGACAAAGCTGAATCGTTAATTGGGGTTCACAGGGACTCGGATAGAGGCTGTTCGGGTACTCTCACATTTGATTTGACTAAATACCGGGAGTCCTAA 3651 0.3947 MPSILSPGKIHKLQIENFKSYKGFQDIGPFYDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRRAFVRLIYRLANDSELKFTRTITSAGASEYRIDDSVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHLRLQDQLKSMKKEHFLWQLYNIENDIVKTTEELETDKRSREGVIEELENYEHEASKKKKEQAKYLKEVMLREKKITEKSNKLDKTQPELLKLKEEMTRINTKIKKGKKELNKKKEEQRRHAGDIAGLESGIQDLTAKMADLQEKSRNVGDQLKLDGNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEVQNNLEENLQQLKNRESELDSQEKQMRERLEKIRDNYAKNKDTVENLNKELREMKEKHNEAKRNYDNLKMKIGEVENNLRELKADRYENERDAKLSQAVATLKRLFQGVHGRMTELCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTSKLVFDVIQFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKFEACLKQKEQYESELEQLGSIRDMHLKESETAGKKSGLEKKIQYAEIEKGSIEDKLSNFSLEKGTIKEEIKRISPELEKLRDAVEKRNKQLRTLEKRINEITDRIYKDFSKSVGVANIREYEENRLKDAQTVAEERLNLSSQLSKLKYQLEYEQNRDMNSRIQELESSVSALENDLEHVQNKEDEAMLAAEKATEEMNQLKDEAKEWKSKSDDCEKEIHEWKKQASTSTTKLSKLNRGINSKETQIEQLMGQKQEILEKCELEQISLPIISDPMDTDSSTPGPVFDFDKLSRTLKDKHSDRDKIEVEFKTKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFDAVRKEEQEKAKRFNDVKQKRYDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDTDGGCGFQSIVISLKDSFYDKAESLIGVHRDSDRGCSGTLTFDLTKYRES* 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2139 1216 Coils Coil 342 369 - -
Tpr1g2139 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 275 IPR027417 -
Tpr1g2139 1216 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Tpr1g2139 1216 Coils Coil 412 502 - -
Tpr1g2139 1216 Coils Coil 906 933 - -
Tpr1g2139 1216 Gene3D - 948 1215 IPR027417 -
Tpr1g2139 1216 Gene3D - 8 218 IPR027417 -
Tpr1g2139 1216 PIRSF SMC 8 1208 IPR024704 GO:0005524|GO:0016887
Tpr1g2139 1216 SUPERFAMILY Smc hinge domain 479 681 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr1g2139 1216 Gene3D - 578 660 - -
Tpr1g2139 1216 Coils Coil 751 778 - -
Tpr1g2139 1216 Coils Coil 170 231 - -
Tpr1g2139 1216 Pfam SMC proteins Flexible Hinge Domain 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr1g2139 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1215 - -
Tpr1g2139 1216 SMART SMC_hinge_2 517 633 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tpr1g2139 1216 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1215 - -
Tpr1g2139 1216 Coils Coil 307 334 - -
Tpr1g2139 1216 CDD ABC_SMC1_euk 1095 1210 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Tpr1g2139 1216 Pfam RecF/RecN/SMC N terminal domain 10 1197 IPR003395 -
Tpr1g2139 1216 Coils Coil 829 898 - -
Tpr1g2139 1216 Coils Coil 251 285 - -
Tpr1g2139 1216 Gene3D - 495 577 - -
Tpr1g2139 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 810 1198 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2139 Tpr-Chr1 22511892 22526126 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2139 8 362 Structural Maintenance of Chromosomes family AT5G61460 24.274 5.92e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2139 K06636 - gmx:100791953 1934.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2139 1 22511892 22526126 Tpr1g2139 1 22511892 22526126 ECH