Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2129 ATGAATCAGTCTTTTCTCCACAACCCAGATATGGAAATGTTGCAAGACCCTTCAGAAATTTTATTCGAATCATTTAATGTTCACGATTCTCTTTCCTTCGACATGGTCGATTCCTCATCAAGTTCACAGACACCAGTGTCTCCGAACTCGATGAAGCCATATGAAGCTAAAGAAGTATTGCAGAATAATAATAATAAGATGGATCAAAAGTCTTATATAGGTGTAAGAAAAAGACCTTGGGGAAAATTTGCAGCAGAGATCAGAGATACAACAAGAGGAGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTTATCAATTTTCCTGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATAAATGTATAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAGACACTATGAACAGAGAAAGTTGTCATCAAAAGCAAGAAAGAATAATAAAGCAGAGAAACAAGAATCAGCAGAGGGATCATCATCAAGTGTGTTGGTGTTAGAAGATTTAGGAGCTGAATATCTTGAGCAACTTCTAAGTATGTCTGATACTGATAATCAAAGTACAAACACCAGCTTCTAA 651 0.3671 MNQSFLHNPDMEMLQDPSEILFESFNVHDSLSFDMVDSSSSSQTPVSPNSMKPYEAKEVLQNNNNKMDQKSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVINFPVQRVKESLQEIQYKCIKGSSPALALKERHYEQRKLSSKARKNNKAEKQESAEGSSSSVLVLEDLGAEYLEQLLSMSDTDNQSTNTSF* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2129 216 Gene3D AP2/ERF domain 70 131 IPR036955 GO:0003700|GO:0006355
Tpr1g2129 216 MobiDBLite consensus disorder prediction 163 177 - -
Tpr1g2129 216 MobiDBLite consensus disorder prediction 163 187 - -
Tpr1g2129 216 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Tpr1g2129 216 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Tpr1g2129 216 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Tpr1g2129 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 25 204 - -
Tpr1g2129 216 PANTHER DNA-BINDING DOMAIN 25 204 IPR044808 GO:0003700|GO:0009873
Tpr1g2129 216 ProSiteProfiles AP2/ERF domain profile. 71 129 IPR001471 GO:0003700|GO:0006355
Tpr1g2129 216 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Tpr1g2129 216 SMART rav1_2 71 135 IPR001471 GO:0003700|GO:0006355
Tpr1g2129 216 CDD AP2 70 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2129 Tpr-Chr1 22341592 22343383 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2129 60 206 AP2-EREBP Transcription Factor Family AT3G23240 53.061 4.42e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g2129 AP2 4.8e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2129 K14516 - gmx:100527364 225.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2129 1 22341592 22343383 Tpr1g2129 1 22341592 22343383 ECH