Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2127 ATGGATCAGAAGTCATATATAGGTGTAAGAAAAAGACCTTGGGGGAAATATGCAGCAGAGATCAGAGATACAACAAGAGGAGGAAGAAGAGTATGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTCTCATCAATTTTTCTGTTCAAAGGGTTAAAGAATCTTTGCAAGAGATTCAATATGATTGTAGAAAAGGGTCTTCACCTGCACTTGCACTAAAAGAGAGACACTATCAACAGAGAATGTTGTCATCAAAAGTAAGAAAAAATAATAAAGCAGGGAAATCAGAAGAAGGATCTTCATCAAGTGTATTGGTGTTTGAAGATTTGGGAGCTGAATATCTTGAGCAACTTCTTGCCATGTCTGATAATCAAACTACTAGCAGCAACAACTAG 441 0.3696 MDQKSYIGVRKRPWGKYAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNALINFSVQRVKESLQEIQYDCRKGSSPALALKERHYQQRMLSSKVRKNNKAGKSEEGSSSSVLVFEDLGAEYLEQLLAMSDNQTTSSNN* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2127 146 SUPERFAMILY DNA-binding domain 5 64 IPR016177 GO:0003677
Tpr1g2127 146 Gene3D AP2/ERF domain 4 65 IPR036955 GO:0003700|GO:0006355
Tpr1g2127 146 MobiDBLite consensus disorder prediction 97 117 - -
Tpr1g2127 146 ProSiteProfiles AP2/ERF domain profile. 5 63 IPR001471 GO:0003700|GO:0006355
Tpr1g2127 146 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 4 135 - -
Tpr1g2127 146 SMART rav1_2 5 69 IPR001471 GO:0003700|GO:0006355
Tpr1g2127 146 PRINTS Ethylene responsive element binding protein signature 6 17 IPR001471 GO:0003700|GO:0006355
Tpr1g2127 146 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Tpr1g2127 146 PANTHER DNA-BINDING DOMAIN 4 135 IPR044808 GO:0003700|GO:0009873
Tpr1g2127 146 CDD AP2 4 62 IPR001471 GO:0003700|GO:0006355
Tpr1g2127 146 Pfam AP2 domain 5 55 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2127 Tpr-Chr1 22312560 22313298 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2127 3 142 AP2-EREBP Transcription Factor Family AT3G23240 57.857 4.23e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tpr1g2127 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2127 K14516 - gmx:100811486 191.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2127 1 22312560 22313298 Tpr1g2127 1 22312560 22313298 ECH
Tpr1g2127 1 22312560 22313298 Tpr6g3468 6 37459453 37460329 PCT