Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2122 ATGGCAATGAACAAGAACCAATTCTACAAGCTTGGATATCAAGCTCTCCCACCTATCATAACTCAAGCTAGTACACTTCATCACCACCCTCCACAACCTGTTTCAGACTATGCTTTTCCAATATTTGCCATTGTTGTTCTCAGCATCATGGCTACCATTTTATTGCTCCTTAGTTACTTCACTTTTGTAACCAAATGCTGTTCAAACTGGAATCAAGTTAACCCGATGAGATGGACTTCGGTACTTCGAGCTCGACAGAACGAGGAAGATCACTTCATAGCATTGTCTCCTACGATATGGAACCGAGGACTAGACGAAGCAGTCATCAGAGAAATCCCAAGTTTTCAGTTTATAAAAGAAGAATGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAGGACGTGATAAAAATTCTCCCTAATTGCAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACCAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAACACAACAAACACTTCATTTGACATTATCATAGCACCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCTAACTTAGGTAATGATGAAGAGTTTGTGGTCATTGAATTAGGTGGAAGAGAAAATGAGGTTCAACAAGAAATAAATTATTCAAGGGGAAGCGTAGTACATAGTAGAAATTATCACTCTACAAGGAAAATGAAACCAGTTAAGTGTCACCATATTTCCATCATGGGAGATGAGTATATTGATATCATCAGAAAGAAAGACGACATGTTTTCGATTCAGCCAATTCGAAGATCTTTCTCAATGGATTCTGCAAATGATAGACAAGTTTTTACGGATGTTCAAGCCAGTATACAACAAAATAGGCACAACCAGAATGATGCTAGTGCAAGTGAGGATTGTAATAGCAGAACTAAAAGAGCATTCTTTCCATTTTGTTATGGAAAGGAATCCAAAAATGCATTCCTTCCCTTAGTGATAAACAGCAGAGGCAAATGCAGAATGTAG 1044 0.3831 MAMNKNQFYKLGYQALPPIITQASTLHHHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFVTKCCSNWNQVNPMRWTSVLRARQNEEDHFIALSPTIWNRGLDEAVIREIPSFQFIKEECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTNTSFDIIIAPSSSPQDSQLLSNLGNDEEFVVIELGGRENEVQQEINYSRGSVVHSRNYHSTRKMKPVKCHHISIMGDEYIDIIRKKDDMFSIQPIRRSFSMDSANDRQVFTDVQASIQQNRHNQNDASASEDCNSRTKRAFFPFCYGKESKNAFLPLVINSRGKCRM* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2122 347 SMART ring_2 130 171 IPR001841 -
Tpr1g2122 347 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 337 - -
Tpr1g2122 347 PANTHER RING-H2 FINGER PROTEIN ATL16 1 337 IPR044600 GO:0016567|GO:0016740
Tpr1g2122 347 CDD RING-H2_PA-TM-RING 130 172 - -
Tpr1g2122 347 Pfam Ring finger domain 130 172 IPR001841 -
Tpr1g2122 347 SUPERFAMILY RING/U-box 129 179 - -
Tpr1g2122 347 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Tpr1g2122 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 177 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2122 Tpr-Chr1 22225436 22227322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2122 30 302 C3H Transcription Factor Family AT1G04360 42.903 2.27e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2122 K19041 - gmx:100809883 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2122 1 22225436 22227322 Tpr1g2122 1 22225436 22227322 ECH