Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2119 ATGAGATCAGAAACACCTTCTCCTTCTTCATACAATACCAGATCCAAGAAACCCCAACTTCGAAGCTCAAAATCCCTATTTCAAGATCCCATTATTAGCTCAAAGACACCGGAAAAATCATCTGAGAAGCCATCTCAGCGGACACGCAACCGTGGTGTCGCACTCTCTATATCAGATATTAGAAAAGTTGCTAAGGGTCTTCAAGATCAGAAACAAACAAATGAAACGACGTCGTTGAAGGATAGAACCGTTAGAAGGCAAATCGCATTGGCTTCTCCTCGTAAGAGTAGTAAATCAGCTGATGATGGATCATTAAAACTTCCTGAAAAGTATGAGAATTTGGGCGAGTTTTTTGATAGTTTGGATAGTTCGATTCGATTGTTGCGAATGAAAGGTTCGATGACGTCGTTTACTAATATTAGGCCCAAGATTGAAACTTTAACTGACAGGAGATTTACTCATAGTCATTTGGCTCAATTGAAGTTTATCTTACCTGAGGCGATTGCTATTAAGAAATTATTAGTGTTTGATGAAAGAACAAGTTGTATGAAGCCAGATCTTCATGTTACTATAAACCCTGATGCAGTGGAGTTTGATGCTAAATTGAGATCTGAATCTGGGAATATGTCTCTGAGGAAGTTATTTCGAGAACGGCTCAAAGAATTTTGGAAATCTCATCCAGAGGGTGATGAAATTCCAGAGGAAATACTGCCTGAGCCATTCAGTCGTCCAAAGCATGATCCTCTTTTACACATGTTGAAAACCCCCTCATCATTGTCTACAGTGACATTATCTGATGCACGTGCTTCTCAGCCTTCAACAATGTTGTCAACTGGTGACATTGCAGACAATACAGAAATATATTTAGTGCCTGCTGAGACATCAGTTGAAGCTCTTAACCAGAAGCCTGCAGTTGCTTCTCATACGCCTCAATCTTTTAGAAGACGGTTTTCTCAGAAATTAAAGGAAAATGTACACCCAAAATTTCAATCAGATTCATTCCAACCCTTAGCTGTGCCAGTTTCAGAGTCAAATTTGAAGACAAGTTCCACCTCTGAGGATGCTAAATCCCATCAAAAACCATCATCATCTGAGCTGGTTTCAGAATCATCCAGTAGTGAAGCATGTCTTACAATTCACGGTTCTTCAGAATACTTTACACCAGCTGGTGTTACACCTAGCAAACCTGTTGAGTATACCGAAAGCAAAGAGGGCTCCATGAAAAGCATTGAAGCTATGTCGACTCCAGCTAGATTTGTGTCTACTCCTGCCAGGCTGATGACAACCACACCTGCATTGAAGCCACCTAAAAGGCATTTTATGAGCCCGGATGACAACTCTACCAGCTCACCAGACAAGTTAGTTAAGCGCCCACCTAGTTCAAGGTCATTGAAATTTAACACTCCAATGAAAAATGAAAATGCTGCTGGTGGTTTGTCAACTGGTGACGACATTTCTGATATCCTCCCAGATAATCTTCTCCATTCGATTATGGAAAAAGAAAGAATAGCAATGGAGGAAAGGGATCCAGCTATCTCCCAAGCTAAGAAACGGAAAAAGATTATTGCGAGCCTCCCTAAGCTCTTTAACATGATTCACATGATGTTTCATTCAATAAACCGTTCTGTTCTTACAAAGGAGGAGCTGATGAGCAAGATAATTTCAAGCCACCGTGATATCGTTGATAGAAGTGAAGTTGAAGAACAATTCCATTTGTTGTTAGAATTAGTTCCTGAATGGATTTCTGAGAAGTTGGCCTCCAGTGGAGATATGCTAGTCTCCGTAAATAAAATGTTGAACCCTGAATCCTTAAGAGCATCACTTGAAGAAGCAAAATGA 1839 0.4029 MRSETPSPSSYNTRSKKPQLRSSKSLFQDPIISSKTPEKSSEKPSQRTRNRGVALSISDIRKVAKGLQDQKQTNETTSLKDRTVRRQIALASPRKSSKSADDGSLKLPEKYENLGEFFDSLDSSIRLLRMKGSMTSFTNIRPKIETLTDRRFTHSHLAQLKFILPEAIAIKKLLVFDERTSCMKPDLHVTINPDAVEFDAKLRSESGNMSLRKLFRERLKEFWKSHPEGDEIPEEILPEPFSRPKHDPLLHMLKTPSSLSTVTLSDARASQPSTMLSTGDIADNTEIYLVPAETSVEALNQKPAVASHTPQSFRRRFSQKLKENVHPKFQSDSFQPLAVPVSESNLKTSSTSEDAKSHQKPSSSELVSESSSSEACLTIHGSSEYFTPAGVTPSKPVEYTESKEGSMKSIEAMSTPARFVSTPARLMTTTPALKPPKRHFMSPDDNSTSSPDKLVKRPPSSRSLKFNTPMKNENAAGGLSTGDDISDILPDNLLHSIMEKERIAMEERDPAISQAKKRKKIIASLPKLFNMIHMMFHSINRSVLTKEELMSKIISSHRDIVDRSEVEEQFHLLLELVPEWISEKLASSGDMLVSVNKMLNPESLRASLEEAK* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2119 612 Pfam DNA replication factor Cdt1 C-terminal domain 492 584 IPR032054 -
Tpr1g2119 612 MobiDBLite consensus disorder prediction 1 57 - -
Tpr1g2119 612 MobiDBLite consensus disorder prediction 442 475 - -
Tpr1g2119 612 MobiDBLite consensus disorder prediction 429 482 - -
Tpr1g2119 612 SUPERFAMILY "Winged helix" DNA-binding domain 100 241 IPR036390 -
Tpr1g2119 612 SMART CDT1_2 107 239 IPR014939 -
Tpr1g2119 612 PANTHER DNA REPLICATION FACTOR CDT1 28 612 IPR045173 GO:0003677|GO:0030174|GO:0071163
Tpr1g2119 612 CDD Cdt1_m 91 247 IPR014939 -
Tpr1g2119 612 CDD Cdt1_c 488 609 IPR032054 -
Tpr1g2119 612 Pfam DNA replication factor CDT1 like 107 214 IPR014939 -
Tpr1g2119 612 Gene3D - 483 612 IPR038090 -
Tpr1g2119 612 MobiDBLite consensus disorder prediction 342 374 - -
Tpr1g2119 612 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2119 Tpr-Chr1 22192823 22195798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2119 414 610 Core DNA Replication Machinery Family AT2G31270 50.476 1.51e-54 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2119 K10727 - gmx:100778818 580.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2119 1 22192823 22195798 Tpr1g2119 1 22192823 22195798 ECH