Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2115 ATGGCTTTGACTGTTGATAATCGTAATATGTTTTCAAACATTGATGAAATCAACTCTGATAGGGCAACTTGGAATTTTCAGGCTAAGGTCATAAGACTTTGGCAAGTGAATGATTTTAATCGAGTTAATGTTCCTTTTTCTATTGAAATGGTGTTAATGGATTCAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAATTTAAACATGAGTTAATCGAGGGAAAAGTTTATTCTTTTGAAAATCTTGGTGTGGCAGCTAATACTGGAGCTTATAGGACAACACATCATCCCTACAAACTGAACTTTCAGTTTGGCTCATTGGTTCAGAGGCTGTCCAACTGTGATATTTTGAAGTCTCCATTTACCTTTGTTCCGATTGCTGATATTTTGGGGGGTTGTTATGACACTGATTTTTTACTTGATGTTATTGGTTTCTTGACTGAGATTGGGCAAGAACGTGAGATCACTAATCAGAATGGTAGTACAACAAAGCTGAATGTCATTGCATTGGAAGCTGATGGGTATGATGTTACCTTAGGATTCACTTTCATAAACTGTTTAGGCAATGTGCATAAGCTTCAATGTACACTTTTTGGTCCATATGTTGATGAACTTAATGCCTTTGTTGGAGCTGGTGATCTAACCAATGCTGTGGTTATTGTTCAGCTTGCTAAGGCTAAGATCTTCCAAGACAAGATACATATCCAGAATTGCATGAATTCTTCTGTTTTGATATTTAACCCAACTTGTGACGAAAGTGTAGCCTTAAGGGCAAGTCTCAATGGTTCTGATGAGAATCCGTCTCCATTGACCTTTACTCAAGTTAGCACAGAGTCAAGTGTTCAACCACTTGATGAGTTTCTGCACATTACTCCAAGGATTACCTTGCAAGGTCTCAAGGATGCTACAACTGAATCATCACATGTTGTGGCTGCAACTGTTAAGAGGACTTTAAATCCCAATAGTTATTGGTATACATCATGTTTGTGCGGCAAGGCTGTTGTGCCGGATTCAAAGATGTGGTATTGTGAAAAGTGTAACAGGCATGTTTCAAAGGTTGTTCCTAGGTTTTGTGTCAAAGTCAGAGTCATGGATGATACTGATTCTGCCATTTTTGTGATCTTTGACAAGGAAGCAAGTTCCATATTCAATATGTCTTGTGCTGATATGGTTCGAAATGGAGAAAATGATGTTGGTGAAAGAATTGTTCCACCTCAAATTGATGAGACACTGATTGATCAAACTTGGCTTTTTAAAGTTGAAGCTAAACCTTTTCAAAATCCTAGGTTTGAGCAATCTTTCCGTGTAAGAAAGATTTGTACCGATGAGGGTATAATTAAGCAATTTAAGGACAAGTGGGATAATGAGGATGCTGTGTATCTTAAAAATACAAATGAGGGTGGATCTTTGAGTACTTTGCTGGAAAAGGGGAAAGATGATTATGTAGTTGGGTCGTCAAACGTCCTTTCTGAGGAGTTTGAAAACTTTAGTGGAGATTCTGACAAGGCAAAAGGTTTGATTGTTGAGCGGTCAACTGTTGACGTATCACAAGATTTGATGATGAAATTTTCATCAGCTGTTGTTAATCTTGGCGATGATTTTGATAATATTCCTCTTTGTATTAAGCCAAATACATCCTCTAAGGTGAAACATATTTCATCTGCTGCTGTTGTCAACCCGAATACCGTTGTTGATGGTGTGAAGCCAATTCAACCTGATGATAATGCAAAGCCAATCAACTCTGCTGGATCTGTGAATCGAATCAACTCTGCTGGAGCTGCGAAGTCTCAACAATCTGCTGCTGTTGTTGATGATTTTAGCCAGACAGCTTCAGCCTCTGTTAGGCCATCTGGACAGCGAAAGAAAATTGTTCCTAAGAGAGTGTCCCCTCAACATGAAGATCGAGATGTTGAAGATGAAAATGCTCCTATCAAGTTGTTGAAAAGGGCGGTCAAGATTGAGAAGATTTAA 1986 0.3832 MALTVDNRNMFSNIDEINSDRATWNFQAKVIRLWQVNDFNRVNVPFSIEMVLMDSDGAKIHATIKKTLIYKFKHELIEGKVYSFENLGVAANTGAYRTTHHPYKLNFQFGSLVQRLSNCDILKSPFTFVPIADILGGCYDTDFLLDVIGFLTEIGQEREITNQNGSTTKLNVIALEADGYDVTLGFTFINCLGNVHKLQCTLFGPYVDELNAFVGAGDLTNAVVIVQLAKAKIFQDKIHIQNCMNSSVLIFNPTCDESVALRASLNGSDENPSPLTFTQVSTESSVQPLDEFLHITPRITLQGLKDATTESSHVVAATVKRTLNPNSYWYTSCLCGKAVVPDSKMWYCEKCNRHVSKVVPRFCVKVRVMDDTDSAIFVIFDKEASSIFNMSCADMVRNGENDVGERIVPPQIDETLIDQTWLFKVEAKPFQNPRFEQSFRVRKICTDEGIIKQFKDKWDNEDAVYLKNTNEGGSLSTLLEKGKDDYVVGSSNVLSEEFENFSGDSDKAKGLIVERSTVDVSQDLMMKFSSAVVNLGDDFDNIPLCIKPNTSSKVKHISSAAVVNPNTVVDGVKPIQPDDNAKPINSAGSVNRINSAGAAKSQQSAAVVDDFSQTASASVRPSGQRKKIVPKRVSPQHEDRDVEDENAPIKLLKRAVKIEKI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2115 661 MobiDBLite consensus disorder prediction 609 646 - -
Tpr1g2115 661 CDD RPA1_DBD_A_like 27 113 - -
Tpr1g2115 661 Pfam Replication factor-A C terminal domain 316 428 IPR013955 -
Tpr1g2115 661 CDD RPA1_DBD_C 304 428 IPR013955 -
Tpr1g2115 661 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 399 - -
Tpr1g2115 661 PANTHER REPLICATION FACTOR A 1, RFA1 28 399 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g2115 661 Pfam Domain of unknown function DUF223 49 142 IPR003871 -
Tpr1g2115 661 MobiDBLite consensus disorder prediction 631 646 - -
Tpr1g2115 661 SUPERFAMILY Nucleic acid-binding proteins 11 117 IPR012340 -
Tpr1g2115 661 Gene3D - 284 447 IPR012340 -
Tpr1g2115 661 Gene3D - 119 273 IPR012340 -
Tpr1g2115 661 SUPERFAMILY Nucleic acid-binding proteins 297 429 IPR012340 -
Tpr1g2115 661 Gene3D - 9 115 IPR012340 -
Tpr1g2115 661 SUPERFAMILY Nucleic acid-binding proteins 126 268 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2115 Tpr-Chr1 22150724 22153639 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2115 14 392 Core DNA Replication Machinery Family AT2G06510 22.418 1.11e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2115 - - mtr:MTR_4g036240 577.015