Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2113 ATGTTTTGGGTGCGATGGGGTGATGAAATTTGGCTTCAGGATTGGAAAAGGTTTGCACGGTCACTTAGATGCGGAGATCTTTTAGTTTTTCAATACAAAGGAGGATCAGATTTTAATGTCACTATATTTGATGATAGTAAATTAGAAATTGACTATTCAAATATGATTTGCATCGATGAACAAGAAGCTAAAGAGAGTGATGAGGATGGCTATGTTAAGATTACAAATGAGGGTGACAATACCAAACAACCCCTCAAGAAAAAGAAAATCAACTCAAATGATAGTGCTACTACTGCTGCTACACCTCAAGTGACAAATATTGACAAGAGAAAAATTAATATGAAGGCAACCCAGCAAAAACTCCTAGAGGCTAATAGAAACAGAAAAGGCAACGGTAAGAAAGCTAAGAAATGCTCAAAAATTGTAGATGCGAATAAGAGAAGCTGCACGGATTCTCATCCAGATGAGAATCCCAATTTCACTCTCAAATTATCGCGATTTTCTGTGGAAGGTGATACATTAAGATTGAGGATACCTACTTGGTTTTCGAAAGAATACATGAATGAGTTGTTGCAAAGGAATGCAATGATTAGAAGCGTTGATGAGGAAATGGCATGGGGCGTGAGTTTATACTTGGATGAATCCAATAGAAATTTTACAATGGGAGCTGGTTGGAAGTCATTTTCAAGAGAACATAACTTGCAAGTCGGTGATGTATGTCAATTTGAGATGACTCAACGAGAACCACTTTCATTCACAATTACTATTGTTCCAGCTACAAAGGAACCATGCCCAGAGCAGTTTCAAGAAAACCAACGAGTCCAAGAAAATTCAGAGACATCGCCCGTAGAAGATATGGGTTATGTGGGCAATAATTATGGAGAAGGAATTTCAAGGAGTTGCCCAAATCATGATTCTGAAAGTCCGAATTTACATAATAAATTCGAAGTTTTTGTAACCTCATTAGACAAGCTGGTCATACCAAGTGAGTTATTGAAGAGACACAATATATCTAATGGAAATTCAGTTGAGTTGAAAGTAGGGGAAGGAACATGGTTTGTTGAGGTGAGTTATAATCAATATCTTGATTATGGTTGGTTCACTGAAGGTTGGAAAGAATTTGTGAGAGAATGCAAGGTGAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTGCAAAATCACGTGTTCAAGTTTTCAATTATTTTAGATGTTTAG 1221 0.3686 MFWVRWGDEIWLQDWKRFARSLRCGDLLVFQYKGGSDFNVTIFDDSKLEIDYSNMICIDEQEAKESDEDGYVKITNEGDNTKQPLKKKKINSNDSATTAATPQVTNIDKRKINMKATQQKLLEANRNRKGNGKKAKKCSKIVDANKRSCTDSHPDENPNFTLKLSRFSVEGDTLRLRIPTWFSKEYMNELLQRNAMIRSVDEEMAWGVSLYLDESNRNFTMGAGWKSFSREHNLQVGDVCQFEMTQREPLSFTITIVPATKEPCPEQFQENQRVQENSETSPVEDMGYVGNNYGEGISRSCPNHDSESPNLHNKFEVFVTSLDKLVIPSELLKRHNISNGNSVELKVGEGTWFVEVSYNQYLDYGWFTEGWKEFVRECKVKIGDTCLFEMIDVQNHVFKFSIILDV* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2113 406 ProSiteProfiles B3 DNA-binding domain profile. 161 260 IPR003340 GO:0003677
Tpr1g2113 406 CDD B3_DNA 158 256 IPR003340 GO:0003677
Tpr1g2113 406 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 316 402 - -
Tpr1g2113 406 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 257 - -
Tpr1g2113 406 PANTHER B3 DOMAIN-CONTAINING 316 402 - -
Tpr1g2113 406 PANTHER B3 DOMAIN-CONTAINING 1 257 - -
Tpr1g2113 406 Gene3D - 303 405 IPR015300 -
Tpr1g2113 406 Gene3D - 139 261 IPR015300 -
Tpr1g2113 406 SMART B3_2 315 406 IPR003340 GO:0003677
Tpr1g2113 406 SMART B3_2 164 260 IPR003340 GO:0003677
Tpr1g2113 406 Pfam B3 DNA binding domain 171 257 IPR003340 GO:0003677
Tpr1g2113 406 Pfam B3 DNA binding domain 319 399 IPR003340 GO:0003677
Tpr1g2113 406 CDD B3_DNA 319 403 IPR003340 GO:0003677
Tpr1g2113 406 SUPERFAMILY DNA-binding pseudobarrel domain 155 256 IPR015300 -
Tpr1g2113 406 Coils Coil 107 127 - -
Tpr1g2113 406 SUPERFAMILY DNA-binding pseudobarrel domain 317 397 IPR015300 -
Tpr1g2113 406 ProSiteProfiles B3 DNA-binding domain profile. 310 406 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2113 Tpr-Chr1 22124232 22127929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2113 8 255 B3 DNA Binding Superfamily AT3G18990 25.352 2.28e-14 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g2113 B3 8.3e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2113 - - mtr:MTR_6g061070 543.888