Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2110 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCTTGCAAATTCTTGAGAAGAAAATGTATAAGAGGTTGTGTTTTTGCACCTTATTTTAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAACTTCTTGCTCATCTCCCTGTAAGTGATCGTTGCGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGTTGTGTTTCCCATATTTTTGCCCTCCAACAACAGGTTGTTAATTTACAAACACAACTAGCTTATCTCAAAGAACAAGCATCACAAACTTGTGTCAACAATGCATCAACTAATGAAAACCCTAATGAAAAATCTACAACTCTTACTCCTCTCCAAGATCTTCAAAGTTTGTTCCATGTGGAAACTTCCAATAGTCACCAACTTAGGCAAGAATTTCATACTAATAACTTGTCTAATATTTCCTCAACAACACAATATTATGTTAACAACAATAATCTCATGGATCTAAACCCTATGAGCAATTATGAAAATTCAAGAGGAGTCATTGAAGAAAATAGTTCATTTTCTAGCTTTGAGGAGAGTACTTCTACTTCCATGTCCTATGACATGCAAACAAATAGAAGGACATGGGGTTTTGATGAAGTTGAAGACTTACATTCAGTGGCTTTTGGATATAGTTGA 717 0.364 MAGSSSVSGSPCGACKFLRRKCIRGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQASQTCVNNASTNENPNEKSTTLTPLQDLQSLFHVETSNSHQLRQEFHTNNLSNISSTTQYYVNNNNLMDLNPMSNYENSRGVIEENSSFSSFEESTSTSMSYDMQTNRRTWGFDEVEDLHSVAFGYS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2110 238 PANTHER LOB DOMAIN CONTAINING PROTEIN 7 237 - -
Tpr1g2110 238 Coils Coil 91 111 - -
Tpr1g2110 238 PANTHER LOB DOMAIN-CONTAINING PROTEIN-RELATED 7 237 - -
Tpr1g2110 238 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Tpr1g2110 238 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2110 Tpr-Chr1 22094605 22096169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2110 11 237 AS2 family AT3G58190 51.948 4.17e-72 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr1g2110 LOB 4.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2110 K13945 - gmx:100776678 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2110 1 22094605 22096169 Tpr1g2110 1 22094605 22096169 ECH