Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2109 ATGGCTTCTGCAAATGGATCTGGCTCCGGCTCAGGCTCAGGATCTCCATGTGGGGCTTGCAAGTTCCTCCGTAGAAAGTGTACATCTGAATGCATATTTGCACCTTATTTTTGTTGTGAACAAGGAAGTATTAGATTTGCAGCCATTCATAAAGTGTTTGGTGCTAGCAATGTTTCCAAGATGCTCTTGAATATACCTGCTCATGATCGTCCTGAAGCTGTTGTAACAATTGCTTATGAAGCTCAAGCTCGTATTATAGATCCTGTTTATGGTTGTGTCTCCCATATTTTTGCCTTACAACAACAGGTAGCAAGCTTGCAAGCACAACTGATGCAAGCAAAGGTACAGCTAAGTCAAAACCTGGAGGAGTCAAAGAACATGGAGAATCAATGGTCAGGGAATGTTGTTAGTCAACAACAATTAATCAATCCATTTTGTCCCACAAATATGAACCTTGTATCTCCTAAGAGCTCACTTGATTCAATTGATTATAGCAGCTGCAGTATCAATGATGGAATGAGCATACAAGACATACTAAGCAACAAATTAAAGAGACATTAA 561 0.3993 MASANGSGSGSGSGSPCGACKFLRRKCTSECIFAPYFCCEQGSIRFAAIHKVFGASNVSKMLLNIPAHDRPEAVVTIAYEAQARIIDPVYGCVSHIFALQQQVASLQAQLMQAKVQLSQNLEESKNMENQWSGNVVSQQQLINPFCPTNMNLVSPKSSLDSIDYSSCSINDGMSIQDILSNKLKRH* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2109 186 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 4 181 - -
Tpr1g2109 186 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Tpr1g2109 186 PANTHER LOB DOMAIN CONTAINING PROTEIN 4 181 - -
Tpr1g2109 186 Pfam Lateral organ boundaries (LOB) domain 16 113 IPR004883 -
Tpr1g2109 186 Coils Coil 96 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2109 Tpr-Chr1 22091242 22092671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2109 1 160 AS2 family AT2G42430 59.016 3.00e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tpr1g2109 LOB 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2109 K13944 - gmx:100801508 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2109 1 22091242 22092671 Tpr1g2109 1 22091242 22092671 ECH