Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g2106 | ATGGAATTTAGCTACCTCCAAGAAGATTCAAAGAGCTCAAGCGACGAAAACATTGATCGATCATCCGATCAAAACAACGACGATGATCATGATCGCGACATGGGAATTGGTAGATCTTATGAGTGTGTTTTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAATATACATAGAAAAGATAGAGCAAATAATAACAAAAGTGTTACCAAAACTAATTATGCTCCTCCTAGTTCAAGCAAATTAGATAACTATGGAGATCTTGGATTTTATTCAACAATTAATCCAAGTCATCTTACAAGAGGTGGTTATTATTCAACAATTTCATCAACAACTAATCCTCCTGAGGTAGATTCTCTAAATTATCATCAAATATATTTTCCTTCACATCATGTGCAATATAGTGAGATGTTATGTGTTGAAAATCAAAGGATGTTTGGACAAGATTGGAGTGGTTTGAGTTTGTATACAAATCCATTAAGTAAAGACAAAATAGAAAACAACAATGGAGTGGATGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG | 567 | 0.3422 | MEFSYLQEDSKSSSDENIDRSSDQNNDDDHDRDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKTNYAPPSSSKLDNYGDLGFYSTINPSHLTRGGYYSTISSTTNPPEVDSLNYHQIYFPSHHVQYSEMLCVENQRMFGQDWSGLSLYTNPLSKDKIENNNGVDELDLELRLGHYP* | 189 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g2106 | 188 | Pfam | C2H2-type zinc finger | 40 | 64 | - | - | |
Tpr1g2106 | 188 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 42 | 62 | IPR013087 | - | |
Tpr1g2106 | 188 | MobiDBLite | consensus disorder prediction | 12 | 33 | - | - | |
Tpr1g2106 | 188 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 40 | 67 | IPR013087 | - | |
Tpr1g2106 | 188 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 7 | 188 | - | - | |
Tpr1g2106 | 188 | Gene3D | Classic Zinc Finger | 28 | 88 | - | - | |
Tpr1g2106 | 188 | SUPERFAMILY | beta-beta-alpha zinc fingers | 38 | 66 | IPR036236 | - | |
Tpr1g2106 | 188 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Tpr1g2106 | 188 | PANTHER | OS07G0101800 PROTEIN | 7 | 188 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g2106 | Tpr-Chr1 | 22070051 | 22071108 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g2106 | 38 | 188 | C2H2 Transcription Factor Family | AT4G17810 | 35.714 | 3.79e-17 | 73.6 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Tpr1g2106 | zf-C2H2_6 | 1.6e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g2106 | - | - | gmx:102670484 | 202.986 |