Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2106 ATGGAATTTAGCTACCTCCAAGAAGATTCAAAGAGCTCAAGCGACGAAAACATTGATCGATCATCCGATCAAAACAACGACGATGATCATGATCGCGACATGGGAATTGGTAGATCTTATGAGTGTGTTTTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAATATACATAGAAAAGATAGAGCAAATAATAACAAAAGTGTTACCAAAACTAATTATGCTCCTCCTAGTTCAAGCAAATTAGATAACTATGGAGATCTTGGATTTTATTCAACAATTAATCCAAGTCATCTTACAAGAGGTGGTTATTATTCAACAATTTCATCAACAACTAATCCTCCTGAGGTAGATTCTCTAAATTATCATCAAATATATTTTCCTTCACATCATGTGCAATATAGTGAGATGTTATGTGTTGAAAATCAAAGGATGTTTGGACAAGATTGGAGTGGTTTGAGTTTGTATACAAATCCATTAAGTAAAGACAAAATAGAAAACAACAATGGAGTGGATGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 567 0.3422 MEFSYLQEDSKSSSDENIDRSSDQNNDDDHDRDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKTNYAPPSSSKLDNYGDLGFYSTINPSHLTRGGYYSTISSTTNPPEVDSLNYHQIYFPSHHVQYSEMLCVENQRMFGQDWSGLSLYTNPLSKDKIENNNGVDELDLELRLGHYP* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2106 188 Pfam C2H2-type zinc finger 40 64 - -
Tpr1g2106 188 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Tpr1g2106 188 MobiDBLite consensus disorder prediction 12 33 - -
Tpr1g2106 188 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Tpr1g2106 188 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 188 - -
Tpr1g2106 188 Gene3D Classic Zinc Finger 28 88 - -
Tpr1g2106 188 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Tpr1g2106 188 MobiDBLite consensus disorder prediction 1 33 - -
Tpr1g2106 188 PANTHER OS07G0101800 PROTEIN 7 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2106 Tpr-Chr1 22070051 22071108 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2106 38 188 C2H2 Transcription Factor Family AT4G17810 35.714 3.79e-17 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2106 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2106 - - gmx:102670484 202.986