Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2103 ATGGGCATGCCCGAAAATATAATTGTCGGTTCTCATGTTTGGGTTGGAGATCCAGAATTAGTTTGGATTGATGGAGTAGTACTGAATATTAATGGAGAAGAAGCTGAAATTCAAACTAGCAATGAAAAGAAGGTAGTTTCCCATTTGTCAAAATTACATCCCAAGGATACAGATGCTCCTACAGATGGAGTTGATGATATGACAAAGCTCGCTTATTTGCATGAGCCAGGAGTGCTCTATAATTTGGAAACTCGATACAAGATCAATGAAATATATACATATACGGGAAATATTCTTATTGCAATCAATCCCTTTCAAAATCTTCCACACCTGTATGATGCTAGTGCAATGAAAAGATACCAGGGAGAAAAAGTGGGAAATTTAAGCCCACATGTTTTTGCTATTGCTGAAGCAGCATATAGGGCTATGATTAATGAGGCGAAGAGCAACTCTATTCTGGTTAGTGGTGAAAGTGGTGCCGGTAAGACAGAAACCACCAAAATGCTTATGCTTTACTTAGCATATTTGGGTGGTCACACTGCATCTGAAGGACGGACTGTTGAACAACAAGTTCTAGAATCAAACCCAGTTCTCGAAGCATTTGGTAATGCAAAAACAGTTAGAAATGACAATTCTAGCCGTTTTGGAAAGTTTGTTGAGATTCAATTTGATAAATACGGGCGAATATCGGGCGCAGCTATTAGAACTTATCTGCTTGAGAAATCTCGTGTTTGCCAAATATCAGATCCGGAGCGTAATTATCACTGTTTCTACCTTCTCTGTGCTTCTCCTCCAGAGGAAAAGGAGAAATATAAGTTGGGAGATCCAAGATCATTTCATTACCTTAATCAATCCAATTGCTATGAATTAGCTGGTGTTAATGCTGCTCAAGAGTATCTTAGCACCAAAAGAGCCATGGATATTGTGGGAATCAGTCAGGAGGAGCAGGATGCAATTTTCAGAGTTGTTGCTGCTATTCTCCATCTTGGAAACATTAGATTTGAAAAGTCAGAAGACACAGATTCATCAGTTCTAGCAGACGAAGACTCCAAGTTCCATCTCCAAACAACAGCCGAACTTATAATGTGTGATCCTAATGCTGTGGAAGTTGCACTTCGTAAGCGTGTGATGATCACCCCAGAAGAAATCATCGAAAGAAGTCTTGATCCTCTTGCTGCAACAGTTAGCAGGGATGGTTTGGCCAAGACATTATATTCTCGTTTGTTTGACTGGTTAGTCCAGAAAATTAATCTCTCCATTGGGCAGGATCCTGACTCAAAATGTCTCATTGGTGTTCTTGACATATATGGCTTTGAAAGCTTTCAAAATAATAGTTTTGAGCAGTTTTGTATTAATTTTACGAACGAAAAGCTGCAGCAGCACTTCAACCAGCACGTGTTTAAGATGGAGCAAGAGGAGTACACAAAAGAAGAGATTGATTGGAGCTACTTAGAATTTGTAGATAATCAGGATGTACTAGATCTCATCGAAAAGAAACCAGGTGGAATAGTTGCTCTGCTTGATGAGGCTTGTATGTTTCCCAAGTCAACTCATGAAACATTTGCGACAAAACTTTATCAAACATTCAAAGATCACAAACGCTTCATCAAGCCAAAATTGGCACGCTCAGACTTCACTATTGTTCATTATGCAGGCGAGGTCCAGTATCAATCAGAGCACTTCTTAGACAAAAACAAAGACTATGTTGTTCCTGAACATCAAGACATGCTAAGTAATTCCAAATGTTCATTTGTATCAGGCCTTTTTGCTCCACTTTCTGAGGAGACAGCCAAATCTGCTAAGTTTTCTTCTATTGGTTCTCGTTTTAAGCTACAATTACAACATTTGATGGAAGCGCTCAATCTTACAGAGCCCCACTATATTAGATGTGTGAAGCCGAATACTCTATTAAAACCTGGGATATTTGAGAATATGAACGTCATGCATCAATTACGTTCTGGTGGTGTTCTTGAAGCCGTGAGAATAAAATGTGCTGGATTCCCCACTCACAGGACCTTTCATGAATTTTTAACTCGAGTAGGCATTCTTGCACCCGAGATCCTTCATGGGAACTTCGAAGAAAAGGAATCGTGTAAAAAGATTTTAGAGAAGATTGGGCTGACAGGTTATCAGATAGGGAAAACAAAAATATTCCTAAGAGCTGGTCATATGGCAGAATTGGATGCTCGGAGAGCATACAAGCTTAACAATTCTGCAACAATTATCCAAAAGCAAACAAAATGTTATTTTAGTCGGAAAACTTATATTTCACTGCGAAAGTCCTCTATCTTTGTGCAATCTATTTGCAGAGGAGAACTGGCACGGATACAATATTATCACATGCGGAGGAATGCAGCTGCCATCAAAATTCAAGCCTATACACGTAGAAGATTAGCCAGAAATAACTACTTAAAAATAAGGAAGTGTGCCCTTGTCTTAAAGTCAGGTTTTCAGGCTTTGGCTGCTCGACGTGCTCGTGATATATGGCAACGTAGAAAGCAAACTAAGGCATCAACTAGAATTCAGTCCTATTGGCGGCGACATAAAGCTCTCTTTAACTATCAAAACCTTAAGAAAGCAGCACTCATTTCAGAAAGTGTCAATCGCTCCAGCGGTGAACATGAACAGAAGGTTGTGGAGATATCAGTGGAAAATGAATGTCCTTCCGTGGAAGAATCTTCAAATTTATTACCTGAAGCATCCCCAAGTTCTTTCCAAGATAATGAAAGCATCGAAACTATTAGGGTTTTCCCTAATCCTCTCAGAGATACTGAAAACAACGAAGTTATTAGGGATTCCTCTAGTCCCCTCAGAGATGCTGAAAGCAATGAAGCTATTGGGGATTTGTCTAGTCCCCTCAAAGACACTGAAAATATTGAGGCTCTTTCTGCAGAAATAAAAAAATTAAAGGTCATGTTACATGAAGAAAAACAAAAAACTGATGAATATGAAAGGAAATATGTAGAAGCTCAAGGATCTTGCGAAGAGTTGCGTAAAAAGTTAGCCGAAACCGAAAAAAGAGTATATCAGCTTCAGGAGTCATTGAACAGGATGATATCTTCCATGTCAAATCAAGTTACCGAGCTGAAGACGATCTTAAGTACTTCATCAAGATTGAGTTCAACTTTTCGACCTATTGCTAGAGTTGACGTTGCTTCCAGTAACTCTGATACTTCATCTACAGACTCTGATTTCACATTTCCAGCATCCGTCACAAATCCAGAAGCATTATCTTCTGCCGAGCCAAAACTTGTAGTTCAGGATATCACTGTAGCTGAGGGATCAGGATCTGAAAGTGAAAAAGAAGGTTCGTTTGATGATTTCTTCTAG 3330 0.3928 MGMPENIIVGSHVWVGDPELVWIDGVVLNINGEEAEIQTSNEKKVVSHLSKLHPKDTDAPTDGVDDMTKLAYLHEPGVLYNLETRYKINEIYTYTGNILIAINPFQNLPHLYDASAMKRYQGEKVGNLSPHVFAIAEAAYRAMINEAKSNSILVSGESGAGKTETTKMLMLYLAYLGGHTASEGRTVEQQVLESNPVLEAFGNAKTVRNDNSSRFGKFVEIQFDKYGRISGAAIRTYLLEKSRVCQISDPERNYHCFYLLCASPPEEKEKYKLGDPRSFHYLNQSNCYELAGVNAAQEYLSTKRAMDIVGISQEEQDAIFRVVAAILHLGNIRFEKSEDTDSSVLADEDSKFHLQTTAELIMCDPNAVEVALRKRVMITPEEIIERSLDPLAATVSRDGLAKTLYSRLFDWLVQKINLSIGQDPDSKCLIGVLDIYGFESFQNNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYLEFVDNQDVLDLIEKKPGGIVALLDEACMFPKSTHETFATKLYQTFKDHKRFIKPKLARSDFTIVHYAGEVQYQSEHFLDKNKDYVVPEHQDMLSNSKCSFVSGLFAPLSEETAKSAKFSSIGSRFKLQLQHLMEALNLTEPHYIRCVKPNTLLKPGIFENMNVMHQLRSGGVLEAVRIKCAGFPTHRTFHEFLTRVGILAPEILHGNFEEKESCKKILEKIGLTGYQIGKTKIFLRAGHMAELDARRAYKLNNSATIIQKQTKCYFSRKTYISLRKSSIFVQSICRGELARIQYYHMRRNAAAIKIQAYTRRRLARNNYLKIRKCALVLKSGFQALAARRARDIWQRRKQTKASTRIQSYWRRHKALFNYQNLKKAALISESVNRSSGEHEQKVVEISVENECPSVEESSNLLPEASPSSFQDNESIETIRVFPNPLRDTENNEVIRDSSSPLRDAESNEAIGDLSSPLKDTENIEALSAEIKKLKVMLHEEKQKTDEYERKYVEAQGSCEELRKKLAETEKRVYQLQESLNRMISSMSNQVTELKTILSTSSRLSSTFRPIARVDVASSNSDTSSTDSDFTFPASVTNPEALSSAEPKLVVQDITVAEGSGSESEKEGSFDDFF* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2103 1109 ProSiteProfiles IQ motif profile. 783 808 IPR000048 GO:0005515
Tpr1g2103 1109 SUPERFAMILY Tropomyosin 953 1024 - -
Tpr1g2103 1109 CDD MYSc_Myo11 76 720 IPR036018 -
Tpr1g2103 1109 Pfam IQ calmodulin-binding motif 785 803 IPR000048 GO:0005515
Tpr1g2103 1109 Pfam IQ calmodulin-binding motif 835 850 IPR000048 GO:0005515
Tpr1g2103 1109 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 Gene3D - 948 1044 - -
Tpr1g2103 1109 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Tpr1g2103 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 785 IPR027417 -
Tpr1g2103 1109 MobiDBLite consensus disorder prediction 890 911 - -
Tpr1g2103 1109 MobiDBLite consensus disorder prediction 925 952 - -
Tpr1g2103 1109 ProSiteProfiles IQ motif profile. 834 860 IPR000048 GO:0005515
Tpr1g2103 1109 PANTHER MYOSIN 6 1050 - -
Tpr1g2103 1109 Gene3D - 439 623 - -
Tpr1g2103 1109 Gene3D Kinesin motor domain 65 662 IPR036961 -
Tpr1g2103 1109 Gene3D - 666 732 - -
Tpr1g2103 1109 Pfam Myosin N-terminal SH3-like domain 9 46 IPR004009 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 SMART iq_5 782 804 IPR000048 GO:0005515
Tpr1g2103 1109 SMART iq_5 757 779 IPR000048 GO:0005515
Tpr1g2103 1109 SMART iq_5 833 855 IPR000048 GO:0005515
Tpr1g2103 1109 SMART iq_5 734 756 IPR000048 GO:0005515
Tpr1g2103 1109 Coils Coil 959 1014 - -
Tpr1g2103 1109 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 Gene3D - 252 310 - -
Tpr1g2103 1109 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Tpr1g2103 1109 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 863 IPR027417 -
Tpr1g2103 1109 PANTHER MYOSIN MOTOR DOMAIN PROTEIN AND DIL DOMAIN PROTEIN 6 1050 - -
Tpr1g2103 1109 Gene3D - 733 784 - -
Tpr1g2103 1109 Gene3D - 785 835 - -
Tpr1g2103 1109 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tpr1g2103 1109 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2103 Tpr-Chr1 22001226 22021116 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2103 1 1032 Myosins gene family AT1G54560 62.548 0.0 1370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2103 K10357 - gmx:100803485 1737.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2103 1 22001226 22021116 Tpr1g2103 1 22001226 22021116 ECH