Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2094 ATGGCCACAGAAGAACCCGTTGTCGTTGTGGAACCTGTTCCCGAACCAGCAGCCTCGGAGAAAGAAGAACCAAAGGTTGAAGCAGAGAAGAAGACGAAGGAATCCAAACCTAAGAAAGCTTCCAAACCACGAAGTCCTGCTTCTCATCCTACTTACGAAGAGATGATTAAGGATGCAATTGTGAGTCTGAAAGAGAGAACAGGTTCAAGCCAATACGCGATTGCGAAATTCATTGAAGAGAAACACAAACAACAACTTCCTTCAAATTTCAAGAAGCTATTGCTTCAGAATTTGAAGAAGAATGTTGCTTCTGGTAAACTTGTTAAGGTTAAAGGTTCATTCAAACTTCCTTCCAAGACGACGAAACCATCATCATCGGTGACTACAGCTTCTCAGGCGAACAAAAAGCCTGCAGCGTCCAAGCCGAAGACAAAGCCAACTGCTTCGAAGGCTAAGCCAGCTTCTAAGCAAAAGGCTAAAACTGTTGTTAAGCCAAAGGCTGCTTCCAAGCCCAAAACTACTGCTGTCAAAACCAAAACTACTGTTGCTAAACCCAAACCTGCTGCTGCCAAATCCAAAGTTGCTGCAAAGCCCAAGGCTGGTGTGAAAGCGAAGCCCAAGGACAAGTCTGCTAAGGTTGCAAGGACATCGACGAGGACTTCACCGGGGAAGAAAGTACCGAAGAAGGTTGTGGCTGCGAAGAAAGCTCCGGTGAAGAGCGTGAAGCCTAAAATCGTAAAGTCTCCGGCGAAGAAGGTTTCAACGAAGAGAGGAGGGAGGAAATGA 786 0.4606 MATEEPVVVVEPVPEPAASEKEEPKVEAEKKTKESKPKKASKPRSPASHPTYEEMIKDAIVSLKERTGSSQYAIAKFIEEKHKQQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLPSKTTKPSSSVTTASQANKKPAASKPKTKPTASKAKPASKQKAKTVVKPKAASKPKTTAVKTKTTVAKPKPAAAKSKVAAKPKAGVKAKPKDKSAKVARTSTRTSPGKKVPKKVVAAKKAPVKSVKPKIVKSPAKKVSTKRGGRK* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2094 261 Gene3D - 43 129 IPR036388 -
Tpr1g2094 261 MobiDBLite consensus disorder prediction 245 261 - -
Tpr1g2094 261 CDD H15 46 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2094 261 PANTHER HISTONE H1 2 261 - -
Tpr1g2094 261 PANTHER HISTONE H1.1 2 261 - -
Tpr1g2094 261 PRINTS Histone H5 signature 35 56 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2094 261 PRINTS Histone H5 signature 62 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2094 261 PRINTS Histone H5 signature 135 149 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2094 261 PRINTS Histone H5 signature 174 191 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2094 261 PRINTS Histone H5 signature 196 215 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2094 261 MobiDBLite consensus disorder prediction 1 53 - -
Tpr1g2094 261 SUPERFAMILY "Winged helix" DNA-binding domain 45 125 IPR036390 -
Tpr1g2094 261 MobiDBLite consensus disorder prediction 108 261 - -
Tpr1g2094 261 SMART h15plus2 46 113 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2094 261 Pfam linker histone H1 and H5 family 49 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2094 261 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 48 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2094 261 MobiDBLite consensus disorder prediction 16 41 - -
Tpr1g2094 261 MobiDBLite consensus disorder prediction 117 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2094 Tpr-Chr1 21863838 21865007 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2094 50 140 Single Myb Histone (SMH) Gene Family AT1G72740 30.928 8.93e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2094 K11275 - gmx:100795994 135.576