Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2092 ATGGCCACAGAAGAACCCATTGTTGCGGTGGAACCTGTTCCCGAACCAACGATCACCGAACCACCAGCCTCGGAGAAAGAAGAAGCAAAGGTTGAAGCAGAGAAGAAGACGAAGGAATCCAAACCTAAGAAAGCTTCCAAACCACGAAGTCCTGCTTCTCATCCTTCTTACGAAGAGATGATTAAGGATGCAATTGTGACTCTGAAAGAGAGAACAGGTTCAAGCCAATACGCAATTGCGAAATTCATTGAAGAGAAACACAAACAACAACTTCCTTCAAATTTCAAGAAGCTATTGCTTCAGAATTTGAAGAAGAATGTTGCTTCTGGTAAACTTGTTAAGGTTAAAGGTTCATTCAAACTTCCTTCCAAGACGACGAAACCATCATCATCGGTGACTACAGCTTCTCAGGCGAACAAAAAGCCTGCAGCATCCAAGCCGAAGACAAAGCCAAGTGCCTCTAAGTCAAAGGCTAAAACTGTTGTTAAGCCAAAGGCTGCTTCCAAGCCCAAAACTGCTGCTGTCAAAACCAAAACTACTGTTGCTAAACCCAAACCTGCTGCTGCCAAGTCCAAAGTTGCTGCAAAGCCCAAGGCTGGTGTGAAAGCGAAGCCCAAGGACAAGTCTGCTAAGGTTGCAAGGACATCGACGAGGACTTCACCAGGGAAGAAAGTACCGAAGAAGGTTGTGGCTGCGAAGAAAGCTCCGGTGAAGAGCGTGAAGCCTAAAATCGTAAAGTCTCCGGCGAAGAAGGTTTCGGTTAAGAGAGGGGGAAGGAAATGA 783 0.4598 MATEEPIVAVEPVPEPTITEPPASEKEEAKVEAEKKTKESKPKKASKPRSPASHPSYEEMIKDAIVTLKERTGSSQYAIAKFIEEKHKQQLPSNFKKLLLQNLKKNVASGKLVKVKGSFKLPSKTTKPSSSVTTASQANKKPAASKPKTKPSASKSKAKTVVKPKAASKPKTAAVKTKTTVAKPKPAAAKSKVAAKPKAGVKAKPKDKSAKVARTSTRTSPGKKVPKKVVAAKKAPVKSVKPKIVKSPAKKVSVKRGGRK* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2092 260 Gene3D - 49 130 IPR036388 -
Tpr1g2092 260 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 53 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2092 260 CDD H15 51 128 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2092 260 PANTHER HISTONE H1.1 2 260 - -
Tpr1g2092 260 Pfam linker histone H1 and H5 family 54 121 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2092 260 SUPERFAMILY "Winged helix" DNA-binding domain 50 130 IPR036390 -
Tpr1g2092 260 PRINTS Histone H5 signature 40 61 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2092 260 PRINTS Histone H5 signature 67 84 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2092 260 PRINTS Histone H5 signature 140 154 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2092 260 PRINTS Histone H5 signature 173 190 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2092 260 PRINTS Histone H5 signature 195 214 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Tpr1g2092 260 PANTHER HISTONE H1 2 260 - -
Tpr1g2092 260 SMART h15plus2 51 118 IPR005818 GO:0000786|GO:0003677|GO:0006334
Tpr1g2092 260 MobiDBLite consensus disorder prediction 1 58 - -
Tpr1g2092 260 MobiDBLite consensus disorder prediction 21 46 - -
Tpr1g2092 260 MobiDBLite consensus disorder prediction 118 260 - -
Tpr1g2092 260 MobiDBLite consensus disorder prediction 244 260 - -
Tpr1g2092 260 MobiDBLite consensus disorder prediction 122 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2092 Tpr-Chr1 21846791 21847895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2092 55 163 Single Myb Histone (SMH) Gene Family AT1G72740 29.565 3.07e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2092 K11275 - cit:102626409 126.331