Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2090 ATGGCCGATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCAAAACGTGAGGCACCAGCTGGTGAGAAGCCGGAACCTGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTGAGATGATTGGTAGCATCATTGGTGTCTACAACGGAAAGACCTTCAATCAGGTTGAAATTAAGCCTGAAATGATTGGTCACTATTTGGCTGAATTCTCAATCTCTTATAAGCCTGTTAAGCATGGTAGACCTGGTATTGGTTGTAGCGCCCTCCCTAAAAATTAA 447 0.4676 MADVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGCSALPKN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2090 148 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 147 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Tpr1g2090 148 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 Gene3D 30s Ribosomal Protein S19; Chain A 9 145 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 TIGRFAM uS19_arch: ribosomal protein uS19 19 143 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tpr1g2090 148 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 143 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2090 148 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 2 143 - -
Tpr1g2090 148 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2090 Tpr-Chr1 21742189 21744284 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2090 1 143 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 86.713 3.75e-88 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2090 K02958 - thj:104826071 271.552