LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tpr1g2090	ATGGCCGATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCAAAACGTGAGGCACCAGCTGGTGAGAAGCCGGAACCTGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTGAGATGATTGGTAGCATCATTGGTGTCTACAACGGAAAGACCTTCAATCAGGTTGAAATTAAGCCTGAAATGATTGGTCACTATTTGGCTGAATTCTCAATCTCTTATAAGCCTGTTAAGCATGGTAGACCTGGTATTGGTTGTAGCGCCCTCCCTAAAAATTAA	447	0.4676	MADVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGCSALPKN*	149

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tpr1g2090	148	PIRSF	RPS19p_RPS19a_RPS15e_RPS19o	8	147	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr1g2090	148	ProSitePatterns	Ribosomal protein S19 signature.	105	129	IPR020934	GO:0003723
	Tpr1g2090	148	Pfam	Ribosomal protein S19	50	135	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr1g2090	148	Gene3D	30s Ribosomal Protein S19; Chain A	9	145	IPR023575	GO:0003735\|GO:0005840\|GO:0006412
	Tpr1g2090	148	PRINTS	Ribosomal protein S19 family signature	85	104	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr1g2090	148	PRINTS	Ribosomal protein S19 family signature	105	117	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr1g2090	148	PRINTS	Ribosomal protein S19 family signature	117	132	IPR002222	GO:0003735\|GO:0005840\|GO:0006412
	Tpr1g2090	148	SUPERFAMILY	Ribosomal protein S19	55	136	IPR023575	GO:0003735\|GO:0005840\|GO:0006412
	Tpr1g2090	148	TIGRFAM	uS19_arch: ribosomal protein uS19	19	143	IPR005713	GO:0003735\|GO:0006412\|GO:0015935
	Tpr1g2090	148	PANTHER	RIBOSOMAL PROTEIN S19P FAMILY MEMBER	2	143	IPR002222	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tpr1g2090	Tpr-Chr1	21742189	21744284	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tpr1g2090	1	143	Cytoplasmic Ribosomal Protein Gene Family	AT5G09500	86.713	3.75e-88	252

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tpr1g2090	K02958		-	thj:104826071	271.552

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