Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2088 ATGGCACTCATCAAGAAGCTCCGCAAGGCAAAACGTGAGGCACCAGCTGGTGAGAAGCCGGAACCTGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTGAGATGATTGGTAGCATCATTGGTGTCTACAACGGAAAGACCTTCAATCAGGTTGAAATTAAGCCTGAAATGATTGGTCACTATTTGGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCCTCAAGGTTTATTCCTCTCAAGTGA 279 0.4624 MALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2088 92 Gene3D 30s Ribosomal Protein S19; Chain A 1 92 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 Hamap 30S ribosomal protein S19 [rpsS]. 6 81 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 1 92 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 ProSitePatterns Ribosomal protein S19 signature. 45 69 IPR020934 GO:0003723
Tpr1g2088 92 PANTHER BNAA03G55820D PROTEIN 1 92 - -
Tpr1g2088 92 SUPERFAMILY Ribosomal protein S19 3 76 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 MobiDBLite consensus disorder prediction 1 22 - -
Tpr1g2088 92 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 2 92 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 Pfam Ribosomal protein S19 2 75 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 TIGRFAM uS19_arch: ribosomal protein uS19 2 92 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tpr1g2088 92 PRINTS Ribosomal protein S19 family signature 25 44 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 PRINTS Ribosomal protein S19 family signature 45 57 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2088 92 PRINTS Ribosomal protein S19 family signature 57 72 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2088 Tpr-Chr1 21712922 21713964 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2088 1 92 Cytoplasmic Ribosomal Protein Gene Family AT5G09510 98.913 1.06e-63 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2088 K02958 - gmx:100801408 187.963