Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2087 ATGGCACTCATCAAGAAGCTCCGCAAGGCAGCCGATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCAGCCGATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTTCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCAGCCGATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCAGCCGATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCGTCAAGAAGCTCCGCAAGGCAAAACGTGAGGCACCAGCTGGTGAGAAGCCGGAACCTGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTGAGATGATTGGTAGCATCATTGGTGTCTACAACGGAAAGACCTTCAATCAGGTTGAAATTAAGCCTGAAATGATTGGTCACTATTTGGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCCTCAAGGTTTATTCCTCTCAAGTGA 1107 0.4851 MALIKKLRKAADVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAADVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSSRARRRFQRGLTRKPMALIKKLRKAADVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAADVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSARARRRFQRGLTRKPMALVKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2087 368 Gene3D 30s Ribosomal Protein S19; Chain A 17 88 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 Gene3D 30s Ribosomal Protein S19; Chain A 158 226 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 Gene3D 30s Ribosomal Protein S19; Chain A 89 157 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 PRINTS Ribosomal protein S19 family signature 301 320 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 PRINTS Ribosomal protein S19 family signature 321 333 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 PRINTS Ribosomal protein S19 family signature 333 348 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 ProSitePatterns Ribosomal protein S19 signature. 321 345 IPR020934 GO:0003723
Tpr1g2087 368 Gene3D 30s Ribosomal Protein S19; Chain A 227 368 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 Hamap 30S ribosomal protein S19 [rpsS]. 264 357 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 11 79 - -
Tpr1g2087 368 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 80 148 - -
Tpr1g2087 368 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 149 217 - -
Tpr1g2087 368 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 218 368 - -
Tpr1g2087 368 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 218 368 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 11 79 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 80 148 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 149 217 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 Pfam Ribosomal protein S19 266 351 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 SUPERFAMILY Ribosomal protein S19 271 352 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2087 368 TIGRFAM uS19_arch: ribosomal protein uS19 235 368 IPR005713 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2087 Tpr-Chr1 21704839 21714103 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2087 14 79 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 83.333 3.46e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2087 K02958 - thj:104826071 291.197