Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2083 ATGGCCGATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCATCAAGAATGTTGAACCTGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGTACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATTCTCTCTTGGATATGAAGACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCCCGCAGAAGGTTTCAACGTGGTTTGACCCGTAAGCCTATGGCACTCATCAAGAAGCTCCGCAAGGCAAAACGTGAGGCACCAGCTGGTGAGAAGCCGGAACCTGTGAGGACTCACCTCCGTAACATGATCATCGTGCCTAAGATGATTGGTAGCATCATTGGTGTCTACAACGGAAAGACCTTCAATCAGGTTGAAATTAAGCCTGAAATGATTGGTCACTATTTGGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCATGGTAGACCTGGTATTGGTGCTACTCACTCCTCAAGGTTTATTCCTCTCAAGTGA 648 0.4691 MADVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSARARRRFQRGLTRKPMALIKNVEPEVAAQGVPKKRTFKKFSFRGVDLDSLLDMKTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPKMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2083 215 Hamap 30S ribosomal protein S19 [rpsS]. 111 204 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 Pfam Ribosomal protein S19 113 198 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 TIGRFAM uS19_arch: ribosomal protein uS19 82 215 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tpr1g2083 215 ProSitePatterns Ribosomal protein S19 signature. 168 192 IPR020934 GO:0003723
Tpr1g2083 215 Gene3D 30s Ribosomal Protein S19; Chain A 8 73 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 Gene3D 30s Ribosomal Protein S19; Chain A 74 215 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 PRINTS Ribosomal protein S19 family signature 148 167 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 PRINTS Ribosomal protein S19 family signature 168 180 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 PRINTS Ribosomal protein S19 family signature 180 195 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 2 67 - -
Tpr1g2083 215 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 66 215 - -
Tpr1g2083 215 SUPERFAMILY Ribosomal protein S19 118 199 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 66 215 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tpr1g2083 215 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 67 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2083 Tpr-Chr1 21694753 21698712 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2083 1 67 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 79.104 7.11e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2083 K02958 - thj:104826071 285.804