Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2074 ATGGAAGTTGCAGCTGGGGTGATGAAAAAGGAGAAGATGGTGTTTGATGAAACTGAACTGCGGTTGGGATTGCCTGGAAATATTGGAGCTGGAAAAGTAACAGAAGTAGTTGCAAGGAAGAGAGGTTTCTCTGAAACTGAGAGTGAAAGTGATCAAACAAACACTGTGGATTTGAAGCTTAATCTCTCTTCCAAAGAAGGAGCAGCAGATCCAATTGAGAAGACTAAGGAGAAGACTCTTCTGCTCTCTGATTCTGGCGCCAAGCCACCTGCTAAGGCGCAAGTGGTCGGCTGGCCACCAGTGCGGTCTTACCGGAAGAACATGTTTGCAGCTCAAAAGAGCAACAAAGGATTAGAGGAAAGTGAGAAGACCACCACTAATCCAATAAGCTTTGTGAAAGTTAGCATGGATGGTGCACCTTACCTCCGCAAAGTAGATCTCAAGATGTACAAGAGTTACCCAGAGCTCTCTGATGCCTTGGCCAAAATGTTTAACCTCTTTACCAACGGAAATTGTGAATCCCAAGGCACTAAGGATTTCATGAAGGAGAGTAATAAGGTGATGGATCTATTGAACAGCTCCGACTATGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTCATTGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAAGAAGCTGTTGGACTCGCACCAAGAGCTATGGAAAAATGCAAGAACGGGAGCTAG 747 0.4485 MEVAAGVMKKEKMVFDETELRLGLPGNIGAGKVTEVVARKRGFSETESESDQTNTVDLKLNLSSKEGAADPIEKTKEKTLLLSDSGAKPPAKAQVVGWPPVRSYRKNMFAAQKSNKGLEESEKTTTNPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNLFTNGNCESQGTKDFMKESNKVMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIESCKRLRIMKGKEAVGLAPRAMEKCKNGS* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2074 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 241 IPR003311 GO:0005634|GO:0006355
Tpr1g2074 248 Pfam AUX/IAA family 17 239 IPR033389 -
Tpr1g2074 248 PANTHER AUXIN-INDUCED PROTEIN AUX28 9 241 - -
Tpr1g2074 248 Gene3D - 123 241 - -
Tpr1g2074 248 ProSiteProfiles PB1 domain profile. 129 230 IPR000270 GO:0005515
Tpr1g2074 248 SUPERFAMILY CAD & PB1 domains 121 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2074 Tpr-Chr1 21590809 21595828 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2074 111 238 B3 DNA Binding Superfamily AT4G23980 30.469 7.96e-09 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr1g2074 AUX_IAA 1.7e-83 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2074 K14484 - gmx:100780214 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2074 1 21590809 21595828 Tpr1g1761 1 17076869 17080201 ECH
Tpr1g2074 1 21590809 21595828 Tpr1g2074 1 21590809 21595828 ECH