Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2073 ATGAGCTACCATCTATTCTTACATCAACCAACAACACCATCTAATCTAATCTATTCTTCATCTTCTTTTTCTTCCATCTCAATTCTCAATTCAACAAATTCATACCAAGAAATGGAGAATTCATTGGTGAACCATGAAACTGAGCTGAATCTCAAGGCTACAGAATTAAGGTTGGGATTACCCGGCTGTGATGAGGTGAACAAACTTCAATGCAATTTCTCTATTCTTAGAAGCAACAAGAGATCTTCATCAGAAATCAGTACTGAGGTAGATTCCATGAGCAAAAGCAAATTGAATACTTCTAATGGTTCTGAAATCACAAGTCATGATGATCAAGACAATGCTCCACCTTCAAAGGCACAAATAGTGGGATGGCCACCAATTAGATCTTATAGAAAGAATAATTTGCAACAAAAGAAAGGTGAATCAGAAGTTGGGATGTATGTGAAAGTGAGTATGGCTGGTGCACCTTATTTAAGGAAAATAGATCTCAAATTTTACAAGAGTTACTCAGAACTTCTCAAGGTTTTGGAAAATATGTTCAAGTGTACATTTGGTGAATATTCAGAAAGAGAAGGTTATAATGGATCTGAATTTGTTCCAACTTATGAAGACAAAGATGGTGATTGGATGCTTATTGGAGATGTTCCTTGGGAAATGTTCATGTCTTCTTGCAAAAGGTTGAGAATTATGAAAGGATCAGAAGCAAAAGGATTGGGTTGTTTTTGA 729 0.3567 MSYHLFLHQPTTPSNLIYSSSSFSSISILNSTNSYQEMENSLVNHETELNLKATELRLGLPGCDEVNKLQCNFSILRSNKRSSSEISTEVDSMSKSKLNTSNGSEITSHDDQDNAPPSKAQIVGWPPIRSYRKNNLQQKKGESEVGMYVKVSMAGAPYLRKIDLKFYKSYSELLKVLENMFKCTFGEYSEREGYNGSEFVPTYEDKDGDWMLIGDVPWEMFMSSCKRLRIMKGSEAKGLGCF* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2073 242 Coils Coil 35 55 - -
Tpr1g2073 242 MobiDBLite consensus disorder prediction 84 115 - -
Tpr1g2073 242 Gene3D - 141 242 - -
Tpr1g2073 242 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 38 240 IPR003311 GO:0005634|GO:0006355
Tpr1g2073 242 Pfam AUX/IAA family 54 240 IPR033389 -
Tpr1g2073 242 ProSiteProfiles PB1 domain profile. 146 233 IPR000270 GO:0005515
Tpr1g2073 242 SUPERFAMILY CAD & PB1 domains 143 232 - -
Tpr1g2073 242 PANTHER AUXIN-INDUCED PROTEIN 38 240 - -
Tpr1g2073 242 MobiDBLite consensus disorder prediction 84 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2073 Tpr-Chr1 21551968 21553840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2073 134 239 B3 DNA Binding Superfamily AT2G46530 33.962 1.73e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tpr1g2073 AUX_IAA 4e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2073 K14484 - gmx:100780752 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2073 1 21551968 21553840 Tpr1g1760 1 17039129 17040684 ECH
Tpr1g2073 1 21551968 21553840 Tpr1g2073 1 21551968 21553840 ECH
Tpr6g3493 6 37777767 37779256 Tpr1g2073 1 21551968 21553840 PCT