Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2071 ATGTCGAATCACCCTTCCGATACTCCCGCCGACGATTTCCTCGAACAAATTCTCGGCCTCCCGAATTTCACCTCCGCTGATGGTACTGACACTTCTTCCTTAGCTGCTCCGATGATGCTGCAGCTCAACTCCGGCGAAGCAGCCACTCATCTTGGCGCCGGAGGTGGATTTCATGCGCCGGTTTACCATTTGGGCCTGAGTTTGGACCAAGGCAAAGGAGGAGGGTTCTTGAAGCCCGATGATGCTTCCGGGAGTGGGAAGCGTTTCCGGGAGGATGTTGTTGATACCAGACCTAAGAATTTTTTGCAGACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTACTGCTCCACATCCACCAGCAATGCGTCCTAGAGTGCGGGCAAGAAGAGGACAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAGAGAATAGCCGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCCAGTGTCAACAAGACAGATCGAGCTGCGATGCTGGATGAAATTGTGGATTATGTCAAATTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCGCCACTGGTCACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAAAAGTGGTCTAATGATGGCACAGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTAGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCTATCTCACTGGCATCAGCAATATACCAATCACAACCGTCAGACAACTCCAGTATAGTTAAGCCTGAAACTACTCCTCCTCCATAG 870 0.5 MSNHPSDTPADDFLEQILGLPNFTSADGTDTSSLAAPMMLQLNSGEAATHLGAGGGFHAPVYHLGLSLDQGKGGGFLKPDDASGSGKRFREDVVDTRPKNFLQTFHGQPMPTTVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETTPPP* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2071 289 PANTHER TRANSCRIPTION FACTOR UNE12 ISOFORM X1 7 277 - -
Tpr1g2071 289 SMART finulus 139 188 IPR011598 GO:0046983
Tpr1g2071 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 277 - -
Tpr1g2071 289 Pfam Helix-loop-helix DNA-binding domain 138 182 IPR011598 GO:0046983
Tpr1g2071 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 192 IPR036638 GO:0046983
Tpr1g2071 289 Gene3D - 128 190 IPR036638 GO:0046983
Tpr1g2071 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2071 Tpr-Chr1 21536832 21540938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2071 57 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.723 4.34e-119 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2071 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2071 - - gmx:100793177 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2071 1 21536832 21540938 Tpr1g1542 1 14261299 14268084 ECH
Tpr1g2071 1 21536832 21540938 Tpr1g2071 1 21536832 21540938 ECH