Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2052 ATGACACACAAATTGACAAAAGATCAAATTGCAGAATTCTTGGGAGCATTCTCCCTCATTGACAAGGACTCTGACGGATTCATAACTGTGGATGAATTGATAATAATTATCAAATCACTAGAGGGAAATATAACAAAAGAAGAAATTCAAGAAATGATTAGTAAAGGCAATATTGATGGAAATGGCAGGGTGGATTTTGAACAATTCTTGCATATTATAGAAATTAAAATGAAGGATTATTTGACTGAGGAGCTAAAAGACTCATTCAAAGTATTTGATAGCAATAATGATGGATACATATCAGCTACTGAGCTGAGACATGTGATGGTAAAATTGGGAGAGAGGCTAACAGATGAAGAGGTTGAACAAATGATTAGAGAAGCAGATTTAGATGGAGATGGTCGTGTTAGTTATGAAGAATTTGTAAAGTTTATGATGATGAATTAA 447 0.3311 MTHKLTKDQIAEFLGAFSLIDKDSDGFITVDELIIIIKSLEGNITKEEIQEMISKGNIDGNGRVDFEQFLHIIEIKMKDYLTEELKDSFKVFDSNNDGYISATELRHVMVKLGERLTDEEVEQMIREADLDGDGRVSYEEFVKFMMMN* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2052 148 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Tpr1g2052 148 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Tpr1g2052 148 ProSiteProfiles EF-hand calcium-binding domain profile. 80 115 IPR002048 GO:0005509
Tpr1g2052 148 SMART efh_1 12 40 IPR002048 GO:0005509
Tpr1g2052 148 SMART efh_1 48 76 IPR002048 GO:0005509
Tpr1g2052 148 SMART efh_1 120 148 IPR002048 GO:0005509
Tpr1g2052 148 SMART efh_1 84 112 IPR002048 GO:0005509
Tpr1g2052 148 CDD EFh 84 146 IPR002048 GO:0005509
Tpr1g2052 148 Gene3D - 77 148 - -
Tpr1g2052 148 Pfam EF-hand domain pair 83 145 IPR002048 GO:0005509
Tpr1g2052 148 Pfam EF-hand domain pair 16 73 IPR002048 GO:0005509
Tpr1g2052 148 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Tpr1g2052 148 ProSiteProfiles EF-hand calcium-binding domain profile. 116 148 IPR002048 GO:0005509
Tpr1g2052 148 ProSitePatterns EF-hand calcium-binding domain. 93 105 IPR018247 -
Tpr1g2052 148 PANTHER CALCIUM BINDING PROTEIN 1 147 - -
Tpr1g2052 148 SUPERFAMILY EF-hand 2 147 IPR011992 -
Tpr1g2052 148 CDD EFh 12 73 IPR002048 GO:0005509
Tpr1g2052 148 Gene3D - 1 76 - -
Tpr1g2052 148 ProSitePatterns EF-hand calcium-binding domain. 129 141 IPR018247 -
Tpr1g2052 148 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 147 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2052 16 76 EF-hand Containing Proteins AT3G56800 37.705 2.70e-10 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2052 K02183 K13448 gmx:100778454 213.001
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g2052 1 21163001 21164619 Tpr2g3847 2 41258022 41258963 ECH
Tpr1g2052 1 21163001 21164619 Tpr1g2052 1 21163001 21164619 ECH