Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2048 ATGTTCCCTGCACTTATGTCCAATTCCACTTCTTTCTCTCAAGAAACCACTCTCTCTTCTAATACTCTTCCTAGATTAAACCACGTAGTTTCAACCATAAATTCTTCACAACAACCTCAAAAGACCAAGAAAAAAAGAAACCTCCCTGGTAATCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAGGACATTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAGAGAGATCAAAACCTTCAACTACATAGGAGAGGACATAACCTACCATGGAAGTTGAAACAAAGGAACAACAAAGATGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAACCTTCATGTGTTCATCATAACCCTTCAAGGGCTCTTGGAGATCTTACAGGAATTAAGAAACATTTTTCTAGAAAACATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCAAAGATTTATGCTGTTCACTCTGATTGGAAAGCTCATTCTAAAACCTGTGGTACTAGAGAATATAAATGTGATTGTGGTACCCTTTTTTCCAGGAAGGACAGCTTCATAACCCACAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAATATCCAATTATCCACCACAAACCCACTATCCCAATCTCTCTTTCTCTTCCCAAATCAACAAAGCCAAATCACATGGGACCCACCTCAACAAAACCCTAACCCTAATACTCACACATCATCCCTACCACACCATAACATGATCAAGCATGAATCACATCAAAACTTTCACAACAGCAACCTCTCTTCTTCTCCTCTTCCCTCATTTCTTCATGATCACCCTAACAACCCTAATTATAAGACCAATATCATGATGACATCATCACCCTTCCACGTCAGCACACAACAACCTTCCTCCACTTCTGCCATGTCACCACACCTCTCAGCAACGGCACTTCTCCAGCAAGCAGCCACGGTCGGAGCCACCGCCATCACAGGCGGCCAACCGGTTCATCTGCCACGTCAGCTCAGCATGAGCGAGTTTGGATCGGTGACTCAGATTGACTCGGTTGATCACTACATTAACAACATGAGAGACCGGAATCTTAAGAATGACGATCTTACTAGGGACTTTCTTGGCCTTACTAATGGCGGAGGAAATGGTGGTGCTGTTGACGTTACCATCGACATGAAGGATATGCTAACATTCACTGGAGGTTTAGAGTATCACGGCCACCAACCTCATGAAAACATGACGATGTTCAGGCAGTCACAACAACAAGGTTTTGGTTTTCTTGGGACAACAGCAACTGTTCCCGAGTCATGGGGGAATTGTTAG 1344 0.4249 MFPALMSNSTSFSQETTLSSNTLPRLNHVVSTINSSQQPQKTKKKRNLPGNPDPDAEVIALSPRTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKDVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSANIQLSTTNPLSQSLFLFPNQQSQITWDPPQQNPNPNTHTSSLPHHNMIKHESHQNFHNSNLSSSPLPSFLHDHPNNPNYKTNIMMTSSPFHVSTQQPSSTSAMSPHLSATALLQQAATVGATAITGGQPVHLPRQLSMSEFGSVTQIDSVDHYINNMRDRNLKNDDLTRDFLGLTNGGGNGGAVDVTIDMKDMLTFTGGLEYHGHQPHENMTMFRQSQQQGFGFLGTTATVPESWGNC* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2048 447 MobiDBLite consensus disorder prediction 1 56 - -
Tpr1g2048 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Tpr1g2048 447 MobiDBLite consensus disorder prediction 232 252 - -
Tpr1g2048 447 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
Tpr1g2048 447 Gene3D Classic Zinc Finger 51 121 - -
Tpr1g2048 447 SMART c2h2final6 114 144 IPR013087 -
Tpr1g2048 447 SMART c2h2final6 72 94 IPR013087 -
Tpr1g2048 447 SMART c2h2final6 149 169 IPR013087 -
Tpr1g2048 447 MobiDBLite consensus disorder prediction 232 253 - -
Tpr1g2048 447 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Tpr1g2048 447 Gene3D Classic Zinc Finger 127 207 - -
Tpr1g2048 447 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 9 421 - -
Tpr1g2048 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 421 - -
Tpr1g2048 447 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2048 Tpr-Chr1 21077185 21081459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2048 26 411 IDZ Gene Family AT4G02670 50.868 1.33e-123 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g2048 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2048 K25870 - gmx:100780056 531.176