Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2038 ATGGAGCAATATGAAGTTCTAGAACAGATTGGCAAGGGTTCTTTTGCTTCTGCTCTACTTGTAAGACACAAACATGAAAACAAAAGGTATGTGCTGAAGAAGATCCGCCTTGCCCGCCAAACCGACAGAATCCGTAGATCTGCTCACCAGGAGATGGAACTTATATCTAAAGTTCGTAATCCATTCATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGCGAAGGAGGAGATATGGCTGAAGCAATTAAAAAGGCTAATTGTATTCATTTTCCAGAAGAGCGGCTTTGCAAATGGCTAGTTCAACTCTTGATGGCACTTGACTACTTGCACGGAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGCTGACAAGTGATGATCTTACTTCTTCAATTGTGGGGACTCCGAGTCATATGTGCCCAGAGCTTCTTGCTGATATACCCTACGGCTCTAAGTCAGATATCTGGTCATTGGGATGCTGTCTATATGAAATGGCGGCTCACAAACCAGCTTTTAAAGCTCTTGATATGCAAGCACTAATTAACAAAATAAACAAGTCTCTAGTGGCTCCGTTACCAACAATGTATTCTGGCACTTTTCGAGGCATGGTGAAGAGTATGCTTCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCGGAGCTACTAAATCATCCCCATCTTCAACCTTATATACTTAAAGTTCATTTGAAGCTAAATAATCCTAGAAGAAATACTTTTCCATTCCGATGGACAGACTCAAACCATGCTAGGAGAAGTCGATTTGTAGAACCAGAATCTGTTTCCACTCTCTCTAGCAGAGTTAAACGATTGTCATTCAGTAATGATAGGGCATTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTTTGTTCTACTCAAAGAGCACAAGGATTCTCTACTTGTTCAAAACATTATGAACTATCCATTGGATGTGTTCGCGACGAACACAATACTAACAAATCAAAAGACACCAAGCTATCCATTGTTGATCGGATGCAAAGACTGAGAGCAGCTAATGAGTCTTCCATCCCTCGGAGACAGACAACACCATCAAAGATAGCACATACTAGTTCCAAGCGCGATTCATTTCCAGCATCTTCTACTCCAGCTGGTAAATTTACACCACCGTCTCGCAGAGCTTCCCTTCCCCTTCCTACAAGATCCAAGGCCATGACTACCCCTTACAGAGCCAACGTTGGTCTTCTTCGAAGTGTAGACTCTCCTAACATTTCTGTTAATGCGCCACGAATTGACAAGATGGCCGAGTTTTCTTTGGCCCCAGGTGAGGATCATCCTCTCTTCCCTGTGCGTGGAACATCATCAACATCAGCTCAGTGCTCTTCTAGTTCCCCAAGGAGTGCTGCTGCTGCAGCTGCTGACTACTCAATAACAAAGGACAAGTGTACAATCCAGGTTATGGACAAATCCAGTGTCCCTTCCAATGGTGCTCTAGTTTCATATGGCAATGAATCCTCCCAACACGTGGCAACTGCTGTTTCAAGTCATTCCTCCGCTAATTCTCATCAGCGTAAGTTTGACACATCATCTTACCAGCAACGAGCGGAGGCATTGGAAGGGTTGCTCGAGTTCAGTGCTCGGCTCCTACAACAACAGAGGTTTGAAGAGCTTGAGGTTTTGTTGAAGCCATTTGGGCCCGAGAAGGTTTCTCCAAGGGAAACAGCAATTTGGTTGACTAGGAGCTTTAAAGAAACTGTGGTTTAA 1839 0.4307 MEQYEVLEQIGKGSFASALLVRHKHENKRYVLKKIRLARQTDRIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMAEAIKKANCIHFPEERLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLTSSIVGTPSHMCPELLADIPYGSKSDIWSLGCCLYEMAAHKPAFKALDMQALINKINKSLVAPLPTMYSGTFRGMVKSMLRKNPELRPSAAELLNHPHLQPYILKVHLKLNNPRRNTFPFRWTDSNHARRSRFVEPESVSTLSSRVKRLSFSNDRALNPSISGTEVGSLCSTQRAQGFSTCSKHYELSIGCVRDEHNTNKSKDTKLSIVDRMQRLRAANESSIPRRQTTPSKIAHTSSKRDSFPASSTPAGKFTPPSRRASLPLPTRSKAMTTPYRANVGLLRSVDSPNISVNAPRIDKMAEFSLAPGEDHPLFPVRGTSSTSAQCSSSSPRSAAAAAADYSITKDKCTIQVMDKSSVPSNGALVSYGNESSQHVATAVSSHSSANSHQRKFDTSSYQQRAEALEGLLEFSARLLQQQRFEELEVLLKPFGPEKVSPRETAIWLTRSFKETVV* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2038 612 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tpr1g2038 612 CDD STKc_Nek 3 258 - -
Tpr1g2038 612 MobiDBLite consensus disorder prediction 379 413 - -
Tpr1g2038 612 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2038 612 MobiDBLite consensus disorder prediction 376 422 - -
Tpr1g2038 612 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Tpr1g2038 612 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 601 - -
Tpr1g2038 612 SUPERFAMILY Protein kinase-like (PK-like) 1 317 IPR011009 -
Tpr1g2038 612 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Tpr1g2038 612 Gene3D Transferase(Phosphotransferase) domain 1 86 312 - -
Tpr1g2038 612 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g2038 612 PANTHER SERINE/THREONINE-KINASE NEK4 1 601 - -
Tpr1g2038 612 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2038 Tpr-Chr1 20971485 20975973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2038 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 5.62e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Tpr1g2038 Pkinase 2.8e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2038 K08857 - gmx:100810347 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g3524 6 38205232 38213016 Tpr1g2038 1 20971485 20975973 PCT