Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2019 ATGAGAGAAGGGTTGAGATCTCAGACTCGGTCTGGGAAGGGTTCTGTTCAAGGAGAAGTTGTTCATAAGAAAAGGGTTCGTGTGAAGAATGAGGTTTTGGTTTCGGGTGATGAGGGTTTGGTGGAACGTAAGAAGGCCGTAGTCGAGGCTCTATTTTCAGGTGATGATGATTTAGTGGAACCTACCTCATTGATTGAGAAGAAGGGTGAAACTGAGTCATTAGTTTCGGGTGATGAGGGTTTGGTGGAACGTACGAAGGCCGTAGTTGAGGCTTTATTTTCAGGTGATGAGGTTTTTGTGGAACCTACCTCATTGATTGAGAAGAAGGGTGAATCTGAGGCATTAGTTTCCGGTGACGAGGGTTTTGTGGAGCCTACTTCATTGATTGAGAAGAAGGGAGAAACTGAGGCATTAGTTTCGGGCGATGAGGGTTTAGTGGAGCCTACTTCATTGATTGAGAAGGGTGAAACTGAGGCATTAGTTTCGGGTGATGAGGGTTTAGTGGAGCCTACTTCATTGATTGAGAAGAAGGGTGAAACTGAGGCTTTAGTTTTGGGTGATGAGGGTTTAGTGGAGGCTACCTTATCAATTGAGAAGAAGGGTGAAGTTGAGGCTTTATTTTCAGGTGATGAGGGTTTAGTGGAACCTACTTCATCAATTGAGAAGAATGGTGAAACTGGGGCTTTAGTTTCGGGTGATGAGAGTTTAGTGGAATCTACCTCATCTATTGAGAAGAAGGGTGAAGTTGAGGCTTTAGTTTTGGGTGATGAGGTTTTAGTGGAACCTACCTCGTCGATTGAGAAGAAGGGCGAAGTTGAATGTGCAGGCGTTGTTGATTGCGCCTTGAAAACAAAATTTGATTTTGATTTAAACCTGGATTTGAGTGTAAATGTTAACATAGATGAGAATGAGAACAGTAGCCCTAGGAGTTGTTTAAAAGATGGGCATAGTATTGCAGTAGCTGAGAAGGAGAATGAAGGGTTGAGTGGGGGTCGTATATTGCGGTCCAGGTTAAAGAGGGGAGATGACAAAAGAGCTTATAATGGAGGGCATGATTGCATACCTTCTGAGAATGATGGAGAACATGGTCAGTTGGAGATGATACAAGTCAAGAAGGAGCTTGAAGAAGCTGATGAAGTTTTAACTGATGGTAAAAAGAATGATAGGGTTATGTTGAAAATGGGAGGGAAGGGCAAGAAGAAATTGAAACGGAAGCGTGGGAGGCCTCCCAAAACAGAAATAAAAGAGAAAGACCAATTAGATGATCAGCCACCACGGAAGCTTGGGAGGCCTCGGAAAACAGAGATAAAAGAGAAAGATGAATTAGATGATCAGCCACCGCGTAAGCTTAGGAGGCTTTGCAGAACAGAGTTAAAAGAGGATAATCAGTCACCGCGTAAGCTTGGGAGGCCTCGCAAAACAGAGCTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGAGAGGCATCCCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCGTGGAAGACCCCCCAAGACCGAGCAACAAAAACATCTCATGACCCTGGCACATAATAGTAAAGGAAAGGTGAGCCGTGAAGACGGTAAAAAAGTTGTAACTGTAACAGATAGTGAAAGTGAAGTTGATGATACACGCTCAAGGAGATCTTCCGGTAAAAAGTTAAAAAAGAAAGGATTTTCTCCTGTAAGGAAAAATAAATTGCGAAAGGTTTTGAAAACTGAGAATGGTGGGATGGCATCAAATACTGTGGATGCACCTGTTGCTAAACAAAGTACAAGCCGTGAAGAAAAGAAGTTGGTGAGGGATAAAATAATGGAATGTCTCTCGGCTGCAGGATGGACTGTTGACCGTAGACCTAGAAACGGAAGAGATTATATTGATGCAGTATATGTTGCTCTGGACGGAAAAACACATTGGTCAATAACCTTGGCATACAAGAGGCTTAAAAAGCATTATGAAGCCGGGGACGGTGAAGGTAAGTTGTACAGACCAGGATTCAAATTTACACCAATATCGGAGGAAGATTTCAATTCATTAACTAGAGTAGCTACCAAGTCCAGGATAGATAGTAAAGTTAAACGTGTGCCATTTGGAGGAAAGGGTGGAAAGAGAGTCGATGGAGTCAATCGAAAAAAGAAAAAAATAAAACCAGGTTCTGGTGCAGGCAAGGGTAAGTTAGTGAAAGGGAAAAAGAAAAGGAAACGATCACTTCCTGAGGAGGGCAACTCGAATGTTACATCACCTAACAGGGATCGTAAACGGCATAAAACACACAACAAGACTCGATGTGCTCTGTTGGTTCGTGATGCTACAGAGGAGGTAGATTCAGAAGTTAATGGATATGTGCCATACAGTGGAAAACGAACTGTACTTGCCTGGATGATTGATCTGGGCACAATCCTCCAAAATGGGAAGGTCCATTATATGCAAGATAAGTTGGAAATTGCTTTCCAAGGTAAGATCACAGGAGATGGCATTCAATGTGGATGTTGTAATGAAATCATAACAATTTCAGACTTTGGAGCTCATGCAGGAAGCAAACAATCTGATCCTCTGAAAAATATATATACGGAGGAAGAAACTTCACTCCTACAATGCCTGCTAGATTCATGGAATAAACAAGATAAATCTGAACTTAAAAGTTTTCACTTCGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGCGGTGTATGCGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTCCATAAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGTTGATGGAAGTTCAAACCAAACAGTTGTCAATGATGATTTTACTATCCCTACACTGCTCACATGCCATTTATGTGAGGAAAAATTTCACATATCCTGTATTGTGGCAAATGGCGATAAGACCGATGATTCCATGATGGCAAATGGCGATAAGACCGATGATTCCATGATGGCAAATGGCGATAAGACCGATGATTCCAGGAATGCATTTTGTGGAAACAAATGTCAAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGTTCTTTTATTCGGCGGTCAGATGTTGGCCTTGATGTTTCTCTGACAAAATCTCAGACGGTAGAATGTAATTCTAAGCTAGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGACCAATCTGATCCGCAGTATTCTATATAATTGTGGGTCAAACTTCAAACGGCTGAATTATAGTGGGTTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATCTGTGTCGCATCTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTTATTGGAACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATTGAATGGGCACTTAGTTCTTTACATGTTGAGTTATTGGTCATACCAGCTATATCAGAACTCAGAGAAACCTGGACCTCCGTTTTTGGGTTTGAGCCACTTGAACAAACAAGCAAGCAAATAACAAAGAACATGAATCTGTTGGTATTTCCACATGTAGATATGTTACAGAAGAAGATATCAAAGCATGAAATTGCAAATGAAAATTTGATTGCTACTGAAGTTTCTAATCATAAGAATCTTACTACATACAAAGTAGCAAAACTGGATGGGGAAGACTCATCTGTATCTGATTGTTGCCCGAAGATTGAAAAAGTCATATCTATTGAATCTGGTTGTCGGCATTTTGAGAACTCATTGAATAATGCACCTGCCATTACTAGTGACACCATACAGAATAGTATATCCCTAAAAGATGTCACATGTCATGCTGTATATGAGACTGTTCATGAAAAATTGGGCGTGGACCACAAAAGCACCGTAAATGCTGGTGAGGATGTAGCTAAGTCTTGTTGCCAAGTAGAAGATAAGGAAAGACACTGTCTCAGTACATCTTGTATTAACACTGAAGCTTCACAAGAACATTACGTTGGTGCTATGTCGGAGGTTACTGAGAATTGTTCCAAAGAGGTCAAAGTAACAATTGAGGTTGGTTTAAATAACAACAGTGATGAAAAATCTGCACCCTCTTCCGAAGAAAATATTCCTATTGACTCAAAAATTGAGTTTAGGACTAGGGAATCAAAATATTCGGCTGAAAGTAACCATGATTCACCCAAGATTTCTGATAGTTTTGAACCGAGAGTTAAGACTGACTGTGCTCAACCAGGCTGTATTGGATCAGAAGTATATGCTGAATCTGTCAATGGTTGTGGCTCTCATTCTAGACTAGATGGTGATACTGCCACTGGTGAAGCAGGTCTCACAACCAACATGATGCATGTTGAATCAGAGAATACTACCAAAGATTTGCCCGCTAATTGTGAAAACAACTCTAGTTCTGTTAGTGTGCCAAATGCTGATGAAGCAGATCTATATAATTCCAAAACAATTGATCTCCAGAAAAACAAAAATCCAGGAGGTTGCCAATCTATTCTAGTTTCTTCAGGTATTTGTGAGAAAATTGCTGATGGTGTCAATGAGACGAATAAAGCCCTTGATGATAAGCCTGCTGATATTGAAGTAATTCTTGATGATAAGCCTGGTTCCCATTCTAGGCCCAATGGTCATAGAGCCTCTGGCGAAGCAGGTCTCACAACTAACACTTCGATGTATCTTGAATCTCAGAATATCACCAAAGATTTGCCTGTTAATTGTGAAAACAATTCTAGTGTTGGTGCGCCAACAATTGATCTCCAGACAAACAAAAATCCTGGAGATTGCCAATCCATATCAGTATCTTCAGGTGATTGTGAGAAAATTGCAGATGATGTCAATGAGAGGAATAAAGCATCCAGTGCAGTTGATGTTTTTCCGTTTGATGTTGAAGTATTTCCCAATAATAAGTCTGGGATAAGGAAGTCTTCAGAGCTAGCAGAGCTTGATTTGCAGGTTGATCAAACTGAACCGAGTAACGCTGACATTGCTTCAGGTGTGGCTCTGCACTGTATATCTACCGACAGTACTTCACGTGGTAGTACTGACGGGACAGTTCCTGCTAACCAAGGTAGCTGA 5160 0.4116 MREGLRSQTRSGKGSVQGEVVHKKRVRVKNEVLVSGDEGLVERKKAVVEALFSGDDDLVEPTSLIEKKGETESLVSGDEGLVERTKAVVEALFSGDEVFVEPTSLIEKKGESEALVSGDEGFVEPTSLIEKKGETEALVSGDEGLVEPTSLIEKGETEALVSGDEGLVEPTSLIEKKGETEALVLGDEGLVEATLSIEKKGEVEALFSGDEGLVEPTSSIEKNGETGALVSGDESLVESTSSIEKKGEVEALVLGDEVLVEPTSSIEKKGEVECAGVVDCALKTKFDFDLNLDLSVNVNIDENENSSPRSCLKDGHSIAVAEKENEGLSGGRILRSRLKRGDDKRAYNGGHDCIPSENDGEHGQLEMIQVKKELEEADEVLTDGKKNDRVMLKMGGKGKKKLKRKRGRPPKTEIKEKDQLDDQPPRKLGRPRKTEIKEKDELDDQPPRKLRRLCRTELKEDNQSPRKLGRPRKTELKEDVQSPRKLERHPKTELKEDVQSPRKRGRPPKTEQQKHLMTLAHNSKGKVSREDGKKVVTVTDSESEVDDTRSRRSSGKKLKKKGFSPVRKNKLRKVLKTENGGMASNTVDAPVAKQSTSREEKKLVRDKIMECLSAAGWTVDRRPRNGRDYIDAVYVALDGKTHWSITLAYKRLKKHYEAGDGEGKLYRPGFKFTPISEEDFNSLTRVATKSRIDSKVKRVPFGGKGGKRVDGVNRKKKKIKPGSGAGKGKLVKGKKKRKRSLPEEGNSNVTSPNRDRKRHKTHNKTRCALLVRDATEEVDSEVNGYVPYSGKRTVLAWMIDLGTILQNGKVHYMQDKLEIAFQGKITGDGIQCGCCNEIITISDFGAHAGSKQSDPLKNIYTEEETSLLQCLLDSWNKQDKSELKSFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIKKFPSGDWHCIYCCCKFCGLVDGSSNQTVVNDDFTIPTLLTCHLCEEKFHISCIVANGDKTDDSMMANGDKTDDSMMANGDKTDDSRNAFCGNKCQELSERLEMLLGVKHEIEDGFSCSFIRRSDVGLDVSLTKSQTVECNSKLAVALSIMNECFMPYIDHRSGTNLIRSILYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLHVELLVIPAISELRETWTSVFGFEPLEQTSKQITKNMNLLVFPHVDMLQKKISKHEIANENLIATEVSNHKNLTTYKVAKLDGEDSSVSDCCPKIEKVISIESGCRHFENSLNNAPAITSDTIQNSISLKDVTCHAVYETVHEKLGVDHKSTVNAGEDVAKSCCQVEDKERHCLSTSCINTEASQEHYVGAMSEVTENCSKEVKVTIEVGLNNNSDEKSAPSSEENIPIDSKIEFRTRESKYSAESNHDSPKISDSFEPRVKTDCAQPGCIGSEVYAESVNGCGSHSRLDGDTATGEAGLTTNMMHVESENTTKDLPANCENNSSSVSVPNADEADLYNSKTIDLQKNKNPGGCQSILVSSGICEKIADGVNETNKALDDKPADIEVILDDKPGSHSRPNGHRASGEAGLTTNTSMYLESQNITKDLPVNCENNSSVGAPTIDLQTNKNPGDCQSISVSSGDCEKIADDVNERNKASSAVDVFPFDVEVFPNNKSGIRKSSELAELDLQVDQTEPSNADIASGVALHCISTDSTSRGSTDGTVPANQGS* 1720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2019 1719 MobiDBLite consensus disorder prediction 381 564 - -
Tpr1g2019 1719 Pfam Tify domain binding domain 823 872 IPR032308 -
Tpr1g2019 1719 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g2019 1719 PRINTS AT-hook-like domain signature 403 413 IPR017956 GO:0003677
Tpr1g2019 1719 PRINTS AT-hook-like domain signature 423 434 IPR017956 GO:0003677
Tpr1g2019 1719 PRINTS AT-hook-like domain signature 499 509 IPR017956 GO:0003677
Tpr1g2019 1719 Pfam AT hook motif 403 412 IPR017956 GO:0003677
Tpr1g2019 1719 Pfam AT hook motif 465 475 IPR017956 GO:0003677
Tpr1g2019 1719 Pfam AT hook motif 501 511 IPR017956 GO:0003677
Tpr1g2019 1719 Pfam AT hook motif 425 434 IPR017956 GO:0003677
Tpr1g2019 1719 MobiDBLite consensus disorder prediction 697 765 - -
Tpr1g2019 1719 MobiDBLite consensus disorder prediction 409 511 - -
Tpr1g2019 1719 SMART PHD_3 900 941 IPR001965 -
Tpr1g2019 1719 SMART PHD_3 942 1023 IPR001965 -
Tpr1g2019 1719 MobiDBLite consensus disorder prediction 381 395 - -
Tpr1g2019 1719 PANTHER PHD FINGER PROTEIN 12 139 1600 IPR042163 GO:0003714|GO:0045892
Tpr1g2019 1719 SMART AT_hook_2 403 415 IPR017956 GO:0003677
Tpr1g2019 1719 SMART AT_hook_2 465 477 IPR017956 GO:0003677
Tpr1g2019 1719 SMART AT_hook_2 501 513 IPR017956 GO:0003677
Tpr1g2019 1719 SMART AT_hook_2 425 437 IPR017956 GO:0003677
Tpr1g2019 1719 CDD PHD1_AIRE 901 940 - -
Tpr1g2019 1719 ProSiteProfiles Zinc finger PHD-type profile. 898 943 IPR019787 -
Tpr1g2019 1719 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 139 1600 - -
Tpr1g2019 1719 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 890 962 IPR013083 -
Tpr1g2019 1719 SUPERFAMILY FYVE/PHD zinc finger 889 942 IPR011011 -
Tpr1g2019 1719 MobiDBLite consensus disorder prediction 524 553 - -
Tpr1g2019 1719 Coils Coil 1215 1235 - -
Tpr1g2019 1719 MobiDBLite consensus disorder prediction 710 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2019 Tpr-Chr1 20701568 20712720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2019 460 1229 PHD Transcription Factor Family AT5G36670 41.307 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2019 - - cam:101502634 1816.2