Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g2007 ATGAACAATATGGCTTCTCATGAACCTCCAATAGGTAGTAGTAAGCTTCAAAATATGTTGCAAGCTGCAGTGCAATCTGTTCAATGGACTTATAGCCTCTTCTGGCAACTTTGTCCACAACAAATGATTCTTGTATGGGGTGATGGATATTACAATGGAGCAATTAAGACAAGGAAGACAGTGCAACCAATGGAGGTAAGTGCAGAGGAAGCATCTCTACAAAGAAGCCAACAACTAAGAGAACTGTATGAATCATTATCTGCCGGAGAAACAAATCCGCCAACTCGTCGGCCTTGTGCTTCCTTGTCGCCAGAGGACCTAACAGAATCTGAATGGTTCTACTTGATGTGTGTCTCTTTCTCTTTTCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATACACGAGAAGGCAGCATGTGTGGCTCACGGGTGCAAACGAAGTGGACAGCAAAACATTTTCAAGAGCTATTTTAGCCAAGAGTGCTAATATACAGACTGTGGTATGCATTCCTGTATTAGACGGCGTTGTTGAGTTCGGCACTGTAGAAAAGATTCAAGAAGACCTTAATTTCATCAAACACGTGAAGAGCTTCTTTGTAGACAATCATTCTATGCCGCCAAAGCCAGCATTATCAGAACACTCAACCTCTAACCCAACTTCTTCAACTGATCACATTCCCATCATCATGTACACCGTGGCAGACCCACCCATGACAAATCCTAACCAAGATGACATGGATGAAGACGAGGAAGAGGAAGAAGAAGATGATGAAGAAGAAGATGAAGTTGAATCAGGATCCGACAATGAAATAGGAGGTCGTAATCGACGTGCAACTTCAATGACACCGATTGTGGAGCCGAGTGAGCTTATGCAGATTGAAATGCCCGACGATATTCGAGTCGGATCACCAAACGATGGTTCGAATAATTTGGACTCAGATTTTCATTTGCTAGCAGTGAGTAACCAAGGAAACCCATCAGGTCAAGTTGACTCTTACAAAACTATGTCGACACGGAGGTGGGGTCCAATTGAAGACTCGGTACAAGTTCAACCGCCATCTTCAGTGCTTCATCATCCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTATCAACCATTCTCCAAAACCAATCAACAAGATGGATCAATTCACCTTCTATCAACTACATTACTTACTCAACCCAATCATCTTTCACCAACTGGACCAATCACAACTTCCACGCGCTGCCGCCGGACTCCAACACCTCGCAATGGCTCCTCAAATACATCCTCTTCACAGTCCCATTCCTTCACACCAAAAACCACGACGAAACCTCCCCCCAAACCAATGACACTTCCGGAGGACTCAACAATGATCCCTCCGCTCGGCTACGCGGTAAAGGAGGACCGCAAGACGAGCTCAGCGCGAACCATGTTCTCGCTGAGCGAAGACGGAGAGAGAAACTCAATGAGAGGTTCATTATTTTACGATCATTGGTTCCCTTCGTTACGAAGATGGATAAAGCTTCTATATTAGGTGATACGATCGAGTACTTGAAACAGCTCCGGAGAAAGATTCAAGATCTCGAGACGCGTAACCGTCAGATAGAATCTGAGAGGAGTGGCGGAACCGTTTTGGTTGGTCCCACTGAGAAGAAAAAAGTGAGGATTGTGGAAGGGTGTAGTGGGGCTAATAGAGCGAAAGCGGTTGAGGTTGTTGAGAAGGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATAGAATGTTTACACAGAGAAGGTTTGTTGTTGGATGTTATGCAGATGTTGAGGGAGTTGAGGATTGAGGTTATTGGGGTTCAGTCTTCGCTTAACAATGGTGTTTTTGTCGCGGAATTGAGGGCTAAGGTGAAGGAAAATGAAGCAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAACTTATACCTCATAACATTTAG 1986 0.4451 MNNMASHEPPIGSSKLQNMLQAAVQSVQWTYSLFWQLCPQQMILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYTRRQHVWLTGANEVDSKTFSRAILAKSANIQTVVCIPVLDGVVEFGTVEKIQEDLNFIKHVKSFFVDNHSMPPKPALSEHSTSNPTSSTDHIPIIMYTVADPPMTNPNQDDMDEDEEEEEEDDEEEDEVESGSDNEIGGRNRRATSMTPIVEPSELMQIEMPDDIRVGSPNDGSNNLDSDFHLLAVSNQGNPSGQVDSYKTMSTRRWGPIEDSVQVQPPSSVLHHPLEDLTQEDTHYSQTVSTILQNQSTRWINSPSINYITYSTQSSFTNWTNHNFHALPPDSNTSQWLLKYILFTVPFLHTKNHDETSPQTNDTSGGLNNDPSARLRGKGGPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIESERSGGTVLVGPTEKKKVRIVEGCSGANRAKAVEVVEKEVVASVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFVAELRAKVKENEANGKKVSIVEVKRALNQLIPHNI* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g2007 661 Coils Coil 509 536 - -
Tpr1g2007 661 SMART finulus 476 525 IPR011598 GO:0046983
Tpr1g2007 661 Pfam Helix-loop-helix DNA-binding domain 473 520 IPR011598 GO:0046983
Tpr1g2007 661 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 470 519 IPR011598 GO:0046983
Tpr1g2007 661 Gene3D - 471 539 IPR036638 GO:0046983
Tpr1g2007 661 PANTHER TRANSCRIPTION FACTOR TT8 15 659 - -
Tpr1g2007 661 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 536 IPR036638 GO:0046983
Tpr1g2007 661 MobiDBLite consensus disorder prediction 232 280 - -
Tpr1g2007 661 MobiDBLite consensus disorder prediction 241 265 - -
Tpr1g2007 661 PANTHER TRANSCRIPTION FACTOR TT8 15 659 - -
Tpr1g2007 661 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 16 198 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g2007 Tpr-Chr1 20548534 20561696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g2007 299 660 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 37.330 3.60e-58 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g2007 bHLH-MYC_N 4.5e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g2007 - - cam:101506726 896.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr6g0724 6 6010108 6011995 Tpr1g2007 1 20548534 20561696 PCT