Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1996 ATGGAAGGAGAAAGTAACAAAGACAACAACAGTTCAGAGGTATCACATGACAATGAAGAAACCAGCAGCCATGATGTTTCAGAGGATCATCAAATTCAAAATCAACAATTTGTTGAAACAAGTGGGACCCAATGGAATTCCTTACCAAAACTACCTCAAAATAATTATGTTGAATATCTCTCTGAATCCTCAGCTAGTTATCTTCCAAACCCTATGATTCATGGGAATAATTATCAAAATTTCGGTGGTGGTAGTAGCAGCTTCAATGATTCAGGAAAAGCTGCTTTTGATTTTAAGTTTATTGGTTCTTCAAGTACTGATTTTGGCATTAAAAAGCGTGTTGGGTTTAGGAGATATGATGAAGGAAAGGAAGTGATTAAAGCTGAAATTGGAAGTAGTCACAATCTTCTCTGTGCTCAGGGTCATGCAACATGGACACCTGATTCAGTTGGAGATAAACAGAATGCTTCAAGATTTGATCCAATGGGAATGGTTGCTGCACCTTCTTTACTTCAAAGATCACGAGGTAGCTCCTCAAAACAGAGAACTGAGAAAGCGCGTTACACCGACCGCCAACGCAGGCAACGTCTCGCCGACAACCTCAAAGCTTTACACGAATTGCTTCCAAATCCAGAAATGGGTAGTCAAGCTCAAGCCTACATACTAGATGACATAATTGACTATGTTAATTACTTGCAAGTTCAAGTAAAGGAACTAAGTGGAAGTAAATTGCAAGCTGATTCAAATGCTATACCACTAGTTTTTCATGAGGGTTATGGTCATTATATAAAGGGACAAATGCTTAATGAGCCACTTGAAGAGATAATGGGAAAACTACTTGAAGAAGATTCAGCAGCAGCAAGCCAGCTACTTGAAAAGAAAGGTCTTATTATGCTGCCTATTTCTCTTGCTGATGACTTGAACCAAGCTATACAATTGTGGAACCAATCTAGCATGTAG 960 0.3885 MEGESNKDNNSSEVSHDNEETSSHDVSEDHQIQNQQFVETSGTQWNSLPKLPQNNYVEYLSESSASYLPNPMIHGNNYQNFGGGSSSFNDSGKAAFDFKFIGSSSTDFGIKKRVGFRRYDEGKEVIKAEIGSSHNLLCAQGHATWTPDSVGDKQNASRFDPMGMVAAPSLLQRSRGSSSKQRTEKARYTDRQRRQRLADNLKALHELLPNPEMGSQAQAYILDDIIDYVNYLQVQVKELSGSKLQADSNAIPLVFHEGYGHYIKGQMLNEPLEEIMGKLLEEDSAAASQLLEKKGLIMLPISLADDLNQAIQLWNQSSM* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1996 319 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 246 IPR036638 GO:0046983
Tpr1g1996 319 MobiDBLite consensus disorder prediction 1 30 - -
Tpr1g1996 319 CDD bHLH_AtbHLH_like 189 240 IPR045239 -
Tpr1g1996 319 Gene3D - 178 251 IPR036638 GO:0046983
Tpr1g1996 319 MobiDBLite consensus disorder prediction 1 27 - -
Tpr1g1996 319 MobiDBLite consensus disorder prediction 178 192 - -
Tpr1g1996 319 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 304 - -
Tpr1g1996 319 MobiDBLite consensus disorder prediction 171 192 - -
Tpr1g1996 319 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 232 IPR011598 GO:0046983
Tpr1g1996 319 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 18 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1996 Tpr-Chr1 20467608 20470782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1996 163 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 36.747 3.16e-20 86.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tpr1g1996 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1996 - - mtr:MTR_1g072530 383.645