Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1976 ATGAATTACATGTACTCGGTGAAAGAAGAATACTTAGAACCATTATCATCACCATTTCCACCACTTCAACCAATTGAAGGACTTCATGAAATTAGACCCCAACCATTCCTCACCAAAACATTTGATGTAGTTAACGACCAAAGTACCAACCATATAGTTTCGTGGAGCAAAGGTGGCACCAGTTTTGTTGTTTGGGATCCACATGCTTTCTCTAATGCTCTCATTCCCAAATACTTCAAACACAATAATTTCTCAAGCTTTGTCCGACAACTAAACACTTACGGTTTTAGAAAAATAGATCTAAATAGATGGGAATTTGCAAATGAAGGATTCCTAAGAGGGCAAAGACATCTATTAAGGAACATAAGGAGAAAGAAGGGACCTTCTCAGCCTATTCCTAATCATAACTCCCAACAAGGACAGGGTCATTGTATCGACATTGAAGTTGGCTGTTTTGGACTAGATGCAGAAATTGATCGTTTAAGGCAAGAGAAACATGTATTGATGATGGAGCTTATGAGTCTTAGACAGAAGCAATATAATACCACACTGTACCTTCTAGAGATGGAGCAAAGGTTACAAGGGATAGAAATCAATCAGAAACAAATGATGGCATTCTTAGCCAGAGCTATAAAAAATCCTGTCTTTATCCACCAACTACTACAACAAAAAGTGGAGAAAAAGGAGCTTGAAGAAGCCATGAACATGACCAAGAAGAGAAAGCTTGTTGAACAAGGAACTAGACTAGGTACTGGACAATCAAGCAGTGTTAAAGTTGAGCCTTTAGAATTAGGTGATTGTGAATTCGAAGGGTCGGAGTTGGAAATGCAGGTTTTTGAAAGGGGGGAGATGGATAAGGAGGAAGTAGACGAGGCACTAGAATCACAAGAGAGGATAGAAAGATTACTTGGTGATGAAGGGTTCTAG 927 0.3905 MNYMYSVKEEYLEPLSSPFPPLQPIEGLHEIRPQPFLTKTFDVVNDQSTNHIVSWSKGGTSFVVWDPHAFSNALIPKYFKHNNFSSFVRQLNTYGFRKIDLNRWEFANEGFLRGQRHLLRNIRRKKGPSQPIPNHNSQQGQGHCIDIEVGCFGLDAEIDRLRQEKHVLMMELMSLRQKQYNTTLYLLEMEQRLQGIEINQKQMMAFLARAIKNPVFIHQLLQQKVEKKELEEAMNMTKKRKLVEQGTRLGTGQSSSVKVEPLELGDCEFEGSELEMQVFERGEMDKEEVDEALESQERIERLLGDEGF* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1976 308 Pfam HSF-type DNA-binding 36 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g1976 308 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-7A 21 291 - -
Tpr1g1976 308 Coils Coil 220 240 - -
Tpr1g1976 308 Coils Coil 158 178 - -
Tpr1g1976 308 SMART hsfneu3 32 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g1976 308 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g1976 308 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g1976 308 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tpr1g1976 308 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 21 291 IPR027725 -
Tpr1g1976 308 SUPERFAMILY "Winged helix" DNA-binding domain 33 125 IPR036390 -
Tpr1g1976 308 Gene3D - 28 126 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1976 Tpr-Chr1 19962831 19965799 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1976 13 286 HSF AT3G22830 51.943 6.22e-94 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tpr1g1976 HSF_DNA-bind 7.5e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1976 K09419 - gmx:100794264 373.244