Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1975 ATGATTAGAAACATTTCATCACAAAACCTATTCTTCGCGTTAGGGTTTCTTCTTTCAACAACAACAATCCCTTTCGCTCACAGCGAATCACCCACATGCTTAACCGTTTACAAAAACGGCGGCGCTCCGGCGGTGTTCAAATCCCCAAAATGCCCTCGCTGGAACCTCTTCGATTATAATTCTCATCCTCAATCAACCACGCGTTGCCAATCCGCAAAACTCCAAGGTCGAAGAAAATCACAAGAGGATCGCACTCTCTGTGTTCTCGATGTTCGCATTCCATTTCCAGGTTCGATGGGGATCAAGGATGTTGTGGTTGGAATTGTGGCGGTTTTCGATGGTCATAACGGTGCAGAAGCTAGTGAGATGGCGTCGAAACTTTTGATGGAGTATTTTGTTCTGCATACTTATTTTCTTCTTGATGCTACGTATTCTTTTATATTCGAAGCTTCGACAGGAACATTGCTTTATAGGAGTGATCATGATCATGTAAATATACTGCATAGATGGAAAGAGATTTTAGGTTGGGAATGGCATGACCTGCATTCTGAAAGGTTGCAGAATACATTTTCTGCTAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCAATCAATGATATTGATGCGAAGTTTTCTGAGGAAGCCTCTAGAAATAACCTTCATTCAGGATCTACAGCAACAATTGTATTGGTTGCAGATGATAAAATTTTGGTTGCCAATATTGGAGACTCTAAGGCTTTCATTTGCTCTGAAAATTTTCAGTCTCCTAAGGAGGCTAAAGTGAAGGAATTGACTAGCGATCATCATCCAGACAGAGAGGATGAAAAAACTCGGGTGGAAGCTGCTGGTGGTCAAGTTCTAAATTGGGGTGGTGTACCTCGCGTAAATGGTCAGTTAGCTATTACACGGGCTATTGGTGATGTGTTCTTTAAAAGTTATGGAGTTATATCTGTACCAGAAGTGACTGATTGGCAACCTCTAACTGCAAATGATAGTTACTTGGTGGCTGCATCTGATGGAGTCTTTGAGAAGTTGAGTGTGCAAGATGTCTGTGATTTGTTGTGGGAAGTACACCGTTTTAGTGACATGAGATCAGAGTGCACCTCTTCATCTTCCTATTCATTAGCGGATTTTATTATTAATACTGCCTTAAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTTGTTCCTCTGGAATCTGCTAAATCTTCTGCGAACTCACTTAGAAGAAGCTATACTGAAAATGAGGACGCAGGCTTCCCATTATTTGGGCTGCAGGAATCAGCTTACAGAAGCTCAGCTAATGATATCACCTCTGATCTATTGCACCTGGAGCACCCTCATTTGCTAGATACCAAGTTTAAGCGAATATTGGTTGAAGTGAAACATGGTGATTTTGGATGTTTTTATTTATCTGAAAATCTTGATGATTCAGTGGATTCTAAGTGGCCTCCCAAAAAAGATGACCGGGAAGACTATTTGTATGAACTACCCCAGCCTCTACCAGATGCCCTTCACCAACAAGCTGTAGATGGCCCTGTAATTTTGTACAATGACCAAAACTTTTGCTTTCACCTGAGTTCAACTATCAATCAAGCCAAAGACCAATGCATAAACCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGAATCAATTCCTTTAATTGATGCTGGTTCAGATAATGAGTCTTCTGATTATTCGATGCCTGATTCAAGGTATGTCTTAAGGAGGAGTTTTGGTCGTGGATCATATGGAGAAGTATGGTTGGCTTTCCATTGGAATTGTAATCAAGGTAATATTACTGCAGAAATGGGCATGGGCAGCTCAAGTAATCCTGAGTGTCAGGATGGTCCTTCTAACTACACCATGTACATTTTGAAACGTATAATGGTAGAGAAAGGGTCTGCTGTGTACTTAAGTGGGCTGAGGGAAAAATATTTTGGAGAAATTTTCTTAAATGGTTCCGAGTATTCCTTTCAAAACAAATTTCGACTGGAAGGAGCCATATATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAATCTTTTGAGTCTCGGTCCAATGAAATATGGCTTGTATTCAGCTATGAGGGAGTGTCATTGTCAAAGCTTTTATATACTGGAGAAGATGCAAATAGTACTGCCGAGAAAGAAAGACTTGAGCAAGTGAAACAGGTTCGGATACTGCGCCCGTCAAAGTGGTGGCGTTGGTTGAAAACGACGGAAGAAGGGCAAGAGGAAATGCGCAAGCTTATCTGGCAACTGTTATTGGCACTCAAGTCTTGTCACGACCGCAATATCACACACAGAGACATTAAACCCGAGAATATGGTGATATGCTTTGAAGATCCAGAGTCAGGGAGATGCTTGAAAGATACTCCAACAAAAGTTAATAATTTTTCCACCAAAATGCGCATTATTGACTTTGGAAGTGGAATCGATGAATTCACAATAAAGCACTTATATGCTTCTACTGGGCCTTCTAGAGCTGAACAAACTTACGAGTACACACCTCCTGAAGCTTTGCTAAATGCTACGTGGTATCAAGGGCCAACAAGCTCAACTTTGAAGTATGACATGTGGAGTGTTGGTGTTGTGATGTTAGAAATGGTCTTGGGGACACCAAATATTTTCCAGATAAATGCTTTAACACGTGCTCTTTTGGACCGGCATCTTGAGGGCTGGAATGAGGGTGTGAAGGAGCTGGCACACAGACTTAGATCTTTCATGGAATTGTGCATCTTAATCCCTGGGGTTTCTGGCAACTCAAAAAAGTATCACAAAGTGAATCAAGTTGGTGTTTCGCCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTAGACAAATTAAGGCTAGAGATCCTCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTGGTGCGCCGTCTGCTACTATGGGACCCAGAGGATCGGCCAAGTGTTGACGAGGCACTTCGGCATCCCTATTTCCAACCTCCACCAAGGTGA 3024 0.4153 MIRNISSQNLFFALGFLLSTTTIPFAHSESPTCLTVYKNGGAPAVFKSPKCPRWNLFDYNSHPQSTTRCQSAKLQGRRKSQEDRTLCVLDVRIPFPGSMGIKDVVVGIVAVFDGHNGAEASEMASKLLMEYFVLHTYFLLDATYSFIFEASTGTLLYRSDHDHVNILHRWKEILGWEWHDLHSERLQNTFSANFDDSFHLEILKEALLRAINDIDAKFSEEASRNNLHSGSTATIVLVADDKILVANIGDSKAFICSENFQSPKEAKVKELTSDHHPDREDEKTRVEAAGGQVLNWGGVPRVNGQLAITRAIGDVFFKSYGVISVPEVTDWQPLTANDSYLVAASDGVFEKLSVQDVCDLLWEVHRFSDMRSECTSSSSYSLADFIINTALKKGSMDNMAAVVVPLESAKSSANSLRRSYTENEDAGFPLFGLQESAYRSSANDITSDLLHLEHPHLLDTKFKRILVEVKHGDFGCFYLSENLDDSVDSKWPPKKDDREDYLYELPQPLPDALHQQAVDGPVILYNDQNFCFHLSSTINQAKDQCINPEGFASFIGLLESIPLIDAGSDNESSDYSMPDSRYVLRRSFGRGSYGEVWLAFHWNCNQGNITAEMGMGSSSNPECQDGPSNYTMYILKRIMVEKGSAVYLSGLREKYFGEIFLNGSEYSFQNKFRLEGAIYEEGLNHIARYVESFESRSNEIWLVFSYEGVSLSKLLYTGEDANSTAEKERLEQVKQVRILRPSKWWRWLKTTEEGQEEMRKLIWQLLLALKSCHDRNITHRDIKPENMVICFEDPESGRCLKDTPTKVNNFSTKMRIIDFGSGIDEFTIKHLYASTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLEMVLGTPNIFQINALTRALLDRHLEGWNEGVKELAHRLRSFMELCILIPGVSGNSKKYHKVNQVGVSPASWKCSEEFFSRQIKARDPLKIGFSNIWALRLVRRLLLWDPEDRPSVDEALRHPYFQPPPR* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1975 1007 CDD PP2Cc 68 406 IPR001932 -
Tpr1g1975 1007 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 22 568 - -
Tpr1g1975 1007 SMART serkin_6 582 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1975 1007 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Tpr1g1975 1007 ProSiteProfiles PPM-type phosphatase domain profile. 68 406 IPR001932 -
Tpr1g1975 1007 ProSiteProfiles Protein kinase domain profile. 582 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1975 1007 SUPERFAMILY PP2C-like 62 407 IPR036457 -
Tpr1g1975 1007 Gene3D Transferase(Phosphotransferase) domain 1 743 1003 - -
Tpr1g1975 1007 SUPERFAMILY Protein kinase-like (PK-like) 577 1004 IPR011009 -
Tpr1g1975 1007 PANTHER ALPHABET, ISOFORM E-RELATED 22 568 - -
Tpr1g1975 1007 Pfam Protein phosphatase 2C 160 399 IPR001932 -
Tpr1g1975 1007 Pfam Protein kinase domain 754 1002 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g1975 1007 SMART PP2C_4 60 404 IPR001932 -
Tpr1g1975 1007 Gene3D - 62 414 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1975 Tpr-Chr1 19950305 19962406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1975 640 1006 PP2C-type Phosphatase Gene Family AT3G63340 66.579 1.22e-178 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Tpr1g1975 Pkinase 1.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1975 - - gmx:100781476 1641.71