Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1954 ATGTCAAGTACCACAAGAAATCTTAGGAACCTTGGCCTATGCTTTTCAAATTCCATTCCTCAATCAAAATCTCCACCTACAAGTCCCACTCCTACCACTACTAGTGCATCTTCCTCACATCAACATCATCATCAAATTCATGACAAACCTTCTTCATCTACATCTTCCACATCAATTATGATCAAGAACTTCAACTCTCTCTATGACCCTTCCTTAACCTCTTCTAACCACACTTTATGCTCTTCTTCACTCTCTACCACTTTTACCACATCCACTTCTTTCGAAATCGAACCCGAACCTGAGCCAGTGGACTTCGCGGCAGCCTTTGCATCTCAACGCTTCTTCTTCTCCTCCCCCGGAAGCTCCAACTCACTAATCGAATACACAAACAAAAATATCATCCAACATTCTTCAATACCATTGACAGATAAGTCCAATAGTGTTAAGCGTGAAAAGAAAGAGAAGATAGAGAAAGAGGATGTTTTGTTCAACGGAAGTGTGGCAGTACCAACCTATTCTCCCGACCCTTATACAGATTTCAGGAGGTCGATGCAAGAGATGGTGGAGGCGCGGCCCGAGTTGATGGATGTGAAATCAAATTGGAATATCTTGCATGAGTTGCTTCTATGTTACCTTGCTCTAAACCCAAAGAATACTCACAAGTACATTCTTGGTGCTTTTGCGGATCTCCTCGTTACCCTCATGTCATTCTAG 714 0.4244 MSSTTRNLRNLGLCFSNSIPQSKSPPTSPTPTTTSASSSHQHHHQIHDKPSSSTSSTSIMIKNFNSLYDPSLTSSNHTLCSSSLSTTFTTSTSFEIEPEPEPVDFAAAFASQRFFFSSPGSSNSLIEYTNKNIIQHSSIPLTDKSNSVKREKKEKIEKEDVLFNGSVAVPTYSPDPYTDFRRSMQEMVEARPELMDVKSNWNILHELLLCYLALNPKNTHKYILGAFADLLVTLMSF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1954 237 MobiDBLite consensus disorder prediction 1 56 - -
Tpr1g1954 237 MobiDBLite consensus disorder prediction 1 40 - -
Tpr1g1954 237 Pfam Transcriptional repressor, ovate 173 234 IPR006458 -
Tpr1g1954 237 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 167 235 IPR006458 -
Tpr1g1954 237 ProSiteProfiles OVATE domain profile. 169 233 IPR006458 -
Tpr1g1954 237 PANTHER TRANSCRIPTION REPRESSOR OFP12 8 236 - -
Tpr1g1954 237 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 8 236 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1954 Tpr-Chr1 19658948 19659978 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Tpr1g1954 Ovate 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1954 - - aprc:113871147 235.728