Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1953 ATGAGAGAAGGGTTGAGATCTCAGACTCGGTCTGGGAAGGGTTCTGTTCAAGGAGAAGTTGTTCATAAGAAAAGGGTTCGTGTGAAGAATGAGGTTTTGGTTTCGGGTGATGAGGGTTTGGTGGAACGTAAGAAGGCCGTAGTCGAGGCTCTATTTTCAGGTGATGATGATTTAGTGGAACCTACCTCATTGATTGAGAAGAAGGGTGAAACTGAGTCATTAGTTTCGGGTGATGAGGGTTTGGTGGAACGTACGAAGGCCGTAGTTGAGGCTTTATTTTCAGGTGATGAGGCATTAGTTTCCGGTGACGAGGGTTTTGTGGAGCCTACTTCATTGATTGAGAAGAAGGGCGAAACTGAGGCATTAGTTTCCGGTGACGAGGGTTTTGTGGAGCCTACTTCATTGATTGAGAAGAAGGGCGAAACTGAGGCATTAGTTTCGGGTGATGAGGGTTTAGTGGAGCCTACTTCATTGATTGAGAAGGGTGAAACTGAGGCATTCGTTTCGGGTGATGAGGGTTTAGTGGAGCCTACTTCATTGATTGAGAAGAAGGGTGAAACTGAGGCTTTAGTTTTGGGTGATGAGGGTTTAGTGGAGGCTACCTTATCGATTGAGAAGAAGGGTGAAGTTGAGGCTTTATTTTCAGGTGATGAGGGTTTAGTGGAACCTACTTCATCAATTGAGAAGAATGGTGAAACTGGGGCTTTAGTTTCGGGTGATGAGAGTTTAGTGGAACCTACCTCATCTATTGAGAAGAAGGGTGAAGTTGAGGCTTTAGTTTTGGGTGATGAGGTTTTAGTGGAACCTACCTCGTCGATTGAGAAGAAGGGCGAAGTTGAATGTGCAGGCGTTGTTGATTGTGCCGTGAAAACAAAATTTGATTTTGATTTAAACCTGGATTTGAGTGTAAATGTTAACATAGATGAGAATGAGAACAGTAGCCCTAGGAGTTGTTTAAAAGATGGGCATAGTATTGCAGTAGCTGATAAGAAGGAGAATGAAGGGTTGAGTGGGGGTCGTATATTGCGGTCCAGGTTAAAGAGGGGAGATGACAAAAGAGCTTATAATGGAGGGCATGATTGCATACCTTCTGAGAATGATGGAGAACATGGTCAGTTGGAGATGATACAAGTCAAGAAGGAGCTTGAAGAAGCTGATGAAGTTTTAACTGATGGTAAAAAGAATGATAGGGTTATGTTGAAAATGGGAGGGAAGGGCAAGAAGAAATTGAAACGGAAGCGTGGGAGGCCTCCCAAAACAGAAATAAAAGAGAAAGACCAATTAGATGATCAGCCACCACGGAAGCTTGGGAGGCCTCGGAAAACAGAGATAAAGGAGAAAGATGAATTAGATGATCAGCCACGGCGTAAGCTTAGGAGGCTTTGCAGAACAGAGTTAAAAGAGGATGATCAGTCACCGCGTAAGCTTGGGAGGCCTCGCAAAACAGAGCTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGAGAGGCCTCCCAAAACAGAGTTAAAAGAGGATGTTCAGTCACCGCGTAAGCGTGGAAGACCCCCCAAGACCGAGCAACAAAAACATCTCATGACCCTGGCACATAATAGTAAAGGAAAGGTGAGCCGTGAAGACGGTAAAAAAGTTGTAACTGTAACAGATAGTGAAAGTGAAGTTGATGATACACGCTCAAGGAGATCTTCCGGTAAAAAGTTAAAAAAGAAAGGATTTTCTCCTGTAAGGAAAAATAAATTGCGAAAGGTTTTGAAAACTGAGAATGGTGGGATGGCATCAAATACTGTGGATGCACCTGTTGCTAAACAAAGTACAAGCCGTGAAGAAAAGAAGTTGGTGAGGGATAAAATAATGGAATGTCTCTCGGCTGCAGGATGGACTGTTGACCGTAGACCTAGAAACGGAAGAGATTATATTGATGCAGTATATGTTGCTCTGGACGGAAAAACACATTGGTCAATAACCTTGGCATACAAGAGGCTTAAAAAGCATTATGAAGCCGGGGACGGTGAAGGTAAGTTGTACAGACCAGGATTCAAATTTACACCAATATCGGAGGAAGATTTCAATTCATTAACTAGAGTAGCTACCAAGTCCAGGATAGATAGTAAAGTTAAACGTGTGCCATTTGGAGGAAAGGGTGGAAAGAGAGTCGATGGAGTCAATCGAAAAAAGAAAAAAATAAAACCAGGTTCTGGTGCAGGCAAGGGTAAGTTAGTGAAAGGGAAAAAGAAAAGGAAACGATCACTTCCTGAGGAGGGCAACTCAAATGTTACATCACCTAACAGGGATCGTAAACGGCATAAAACACACAACAAGACTCGATGTGCTCTGTTGGTTCGTGATGCTACAGAGGAGGTAGATTCAGAAGTTAATGGATATGTGCCATACAGTGGAAAACGAACTGTACTTGCCTGGATGATTGATCTGGGCACAATCCTCCAAAATGGGAAGGTCCATTATATGCAAGATAAGTTGGAAATTGCTTTCCAAGGTAAGATCACAGGAGATGGCATTCACTGTGGATGTTGTAATGAAATCATAACAATTTCAGACTTTGGAGCTCATGCAGGAAGCAAACAATCTGATCCTCTGAAAAATATATATACGGAGGAAGAAACTTCACTCCTACAATGCCTGCTAGATTCATGGAATAAACAAGATAAATCTGAACTTAAAAGTTTTCACTTCGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGCGGTGTATGCGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTCCATAAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGTTGATGGAAGTTCAAACCAAACAGTTGTCAATGATGATTTTACTATGCCTACACTGCTCACATGCCATTTATGTGAGGAAAAATTTCACATATCCTGTATTGTGGCAAATGGCGATAAGACCGATGATTCCATGGTGGCAAATGGCGATAAGACCGATGATTCCATGATGGCAAATGGCGATAAGACCGATGATTCCAGGAATACATTTTGTGGAAACAAATGTCAAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAACATGAAATTGAAGATGGATTTTCTTGGTCTTTTATTCGGCGGTCAGATGTTGGCCTTGATGTTTCTCTGACAAAATCTCAGACGGTAGAATGTAATTCTAAGCTAGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATATATTGATCATAGAAGTGGGACCAATCTGATCCGCAGTATTCTATATAATTGTGGGTCAAACTTCAAACGGCTGAATTATAGTGGGTTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATCTGTGTCGCATCTATCAGGATCCATGGGAACCAACTTGCAGAGATGCCATTTATTGGAACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATTGAATGGGCACTTAGTTCTTTACATGTTGAGTTATTGGTCATACCAGCTATATCAGAACTCAGAGAAACCTGGACCTCCATTTTTGGGTTTGAGCCACTTGAACAAACAAGCAAGCAAATAACAAAGAACATGAATCTGTTGGTATTTCCACATGTAGATATGTTACAGAAGAAGATATCAAAGCATGAAATTGCAAATGAAAATTTGATTGCTACTGAAGTTTCTAATCATAAGAATCTTACTACATACAAAGTAGCAAAACTGGATGGGGAAGACTCATCTGTATCTGATTGTTGCCCGAAGATTGAAAAAGCCATATCTATTGAATCTGGTTGTCGGCATTTTGAGAACTCATTGAATAATGCACCTGCCATTACTAGTGACACCATACAGAATAGTATATCCCTAAAAGATGTCACATGTCATGCTGTATATGAGACTGTTCATGAAAAATTGGGCGTGGACCACAAAAGCACCGTAAATGCTGGTGAGGATGTAGCTAAGTCTTGTTGCCAAGTAGAAGATAAGGAAAGACACTGTCTCAGTACATCTTGTATTAACACTGAAGCTTCACAAGAACATTACGTTGGTGCTATGTCGGAGGTTACTGAGAATTTTTCCAAAGAGGTCAAAGTAACAATTGAGGTTGGTTTAAATAACAACAGTGATGAAAAATCTGCACCCTCTTCTGAAGAAAATATTCCTATTGACTCACAAATTGAGTTTAGGACTAGGGAATCAAAATATTCGGCTGAAAGTAACCATGATTCACCCAAGATTTCTGATAGTTTTGAACCGAGAGTTGAGACTAACTGTGCTCAACCAGGCTGTATTGGATCAGAAGTATATGCTGAATCTGTCAATGGTTGTGGCTCTCATTCTAGACTAGATGGTGATAGTGCCACTGGTGAAGCAGGTCTCACAACCAACATGATGCATGTTGAATCAGAGAATACTACCAAAGATTTGCCCGCTAATTGTGAAAACAACTCTAGTTCTGTTAGTGTGCCAAATGCTGATGAAGCAGATCTATATAATTCCAAAACAATTGATCTCCAGAAAAACAAAAATCCTGGAGGTTGCCAATCTATTCTAGTTTCTTCAGGTATTTGTGAGAAAATTGCTGATGGTGTCAATGAGACGAATAAAGCCCTTGATGATAAGCCTGCTGATATTGAAGTAATTCTTGATGATAAGCCTGGTTCCCATTCTAGGCCCAATGGTCATAGAGCCTCTGGCGAAGCAGGTCTCACAACTAACACTTCGATGTATCTTGAATCTCAGAATATCACCAAAGATTTGCCTGTTAATTGTGAAAACAATTCTAGTGTTGGTGCGCCAACAATTGATCTCCAGACAAACAAAAATCCTGGAGATTGCCAATCCATATCAGTATCTTCAGGTGATTGTGAGAAAATTGCAGATGGTGTCAATGAGAGGAATAAAGCATCCAGTGCAGTTGATGTTTTTCCGTTTGATGTTGAAGTATTTCCCAATAACAAGTCTGGGATAAGGAAGTCTTCAGAGCTAGCAGAGCTTGATTTGCAGGTTGATCAAACTGAACCGAGTAACGCTAACATTGCTTCAGGTGTGGCTCTGCACTGTATATCTACCGACAGTACTTCACGTGGTAGTACTGACGGGACAGTTCCTGCTAACCAAGGTAGCTGA 5184 0.4136 MREGLRSQTRSGKGSVQGEVVHKKRVRVKNEVLVSGDEGLVERKKAVVEALFSGDDDLVEPTSLIEKKGETESLVSGDEGLVERTKAVVEALFSGDEALVSGDEGFVEPTSLIEKKGETEALVSGDEGFVEPTSLIEKKGETEALVSGDEGLVEPTSLIEKGETEAFVSGDEGLVEPTSLIEKKGETEALVLGDEGLVEATLSIEKKGEVEALFSGDEGLVEPTSSIEKNGETGALVSGDESLVEPTSSIEKKGEVEALVLGDEVLVEPTSSIEKKGEVECAGVVDCAVKTKFDFDLNLDLSVNVNIDENENSSPRSCLKDGHSIAVADKKENEGLSGGRILRSRLKRGDDKRAYNGGHDCIPSENDGEHGQLEMIQVKKELEEADEVLTDGKKNDRVMLKMGGKGKKKLKRKRGRPPKTEIKEKDQLDDQPPRKLGRPRKTEIKEKDELDDQPRRKLRRLCRTELKEDDQSPRKLGRPRKTELKEDVQSPRKLERPPKTELKEDVQSPRKRGRPPKTEQQKHLMTLAHNSKGKVSREDGKKVVTVTDSESEVDDTRSRRSSGKKLKKKGFSPVRKNKLRKVLKTENGGMASNTVDAPVAKQSTSREEKKLVRDKIMECLSAAGWTVDRRPRNGRDYIDAVYVALDGKTHWSITLAYKRLKKHYEAGDGEGKLYRPGFKFTPISEEDFNSLTRVATKSRIDSKVKRVPFGGKGGKRVDGVNRKKKKIKPGSGAGKGKLVKGKKKRKRSLPEEGNSNVTSPNRDRKRHKTHNKTRCALLVRDATEEVDSEVNGYVPYSGKRTVLAWMIDLGTILQNGKVHYMQDKLEIAFQGKITGDGIHCGCCNEIITISDFGAHAGSKQSDPLKNIYTEEETSLLQCLLDSWNKQDKSELKSFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIKKFPSGDWHCIYCCCKFCGLVDGSSNQTVVNDDFTMPTLLTCHLCEEKFHISCIVANGDKTDDSMVANGDKTDDSMMANGDKTDDSRNTFCGNKCQELSERLEMLLGVKHEIEDGFSWSFIRRSDVGLDVSLTKSQTVECNSKLAVALSIMNECFMPYIDHRSGTNLIRSILYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLHVELLVIPAISELRETWTSIFGFEPLEQTSKQITKNMNLLVFPHVDMLQKKISKHEIANENLIATEVSNHKNLTTYKVAKLDGEDSSVSDCCPKIEKAISIESGCRHFENSLNNAPAITSDTIQNSISLKDVTCHAVYETVHEKLGVDHKSTVNAGEDVAKSCCQVEDKERHCLSTSCINTEASQEHYVGAMSEVTENFSKEVKVTIEVGLNNNSDEKSAPSSEENIPIDSQIEFRTRESKYSAESNHDSPKISDSFEPRVETNCAQPGCIGSEVYAESVNGCGSHSRLDGDSATGEAGLTTNMMHVESENTTKDLPANCENNSSSVSVPNADEADLYNSKTIDLQKNKNPGGCQSILVSSGICEKIADGVNETNKALDDKPADIEVILDDKPGSHSRPNGHRASGEAGLTTNTSMYLESQNITKDLPVNCENNSSVGAPTIDLQTNKNPGDCQSISVSSGDCEKIADGVNERNKASSAVDVFPFDVEVFPNNKSGIRKSSELAELDLQVDQTEPSNANIASGVALHCISTDSTSRGSTDGTVPANQGS* 1728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1953 1727 PRINTS AT-hook-like domain signature 411 421 IPR017956 GO:0003677
Tpr1g1953 1727 PRINTS AT-hook-like domain signature 431 442 IPR017956 GO:0003677
Tpr1g1953 1727 PRINTS AT-hook-like domain signature 507 517 IPR017956 GO:0003677
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 1 20 - -
Tpr1g1953 1727 ProSiteProfiles Zinc finger PHD-type profile. 906 951 IPR019787 -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 705 773 - -
Tpr1g1953 1727 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 148 1427 - -
Tpr1g1953 1727 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 898 970 IPR013083 -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 1416 1437 - -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 417 519 - -
Tpr1g1953 1727 SMART AT_hook_2 509 521 IPR017956 GO:0003677
Tpr1g1953 1727 SMART AT_hook_2 433 445 IPR017956 GO:0003677
Tpr1g1953 1727 SMART AT_hook_2 411 423 IPR017956 GO:0003677
Tpr1g1953 1727 SMART AT_hook_2 473 485 IPR017956 GO:0003677
Tpr1g1953 1727 SMART AT_hook_2 491 503 IPR017956 GO:0003677
Tpr1g1953 1727 Pfam Tify domain binding domain 831 880 IPR032308 -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 1416 1434 - -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 387 572 - -
Tpr1g1953 1727 CDD PHD1_AIRE 909 948 - -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 387 403 - -
Tpr1g1953 1727 PANTHER PHD FINGER PROTEIN 12 148 1427 IPR042163 GO:0003714|GO:0045892
Tpr1g1953 1727 SMART PHD_3 908 949 IPR001965 -
Tpr1g1953 1727 SMART PHD_3 950 1031 IPR001965 -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 532 561 - -
Tpr1g1953 1727 MobiDBLite consensus disorder prediction 718 744 - -
Tpr1g1953 1727 SUPERFAMILY FYVE/PHD zinc finger 897 950 IPR011011 -
Tpr1g1953 1727 Coils Coil 1223 1243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1953 Tpr-Chr1 19643996 19655351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1953 468 1237 PHD Transcription Factor Family AT5G36670 41.430 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1953 - - cam:101502634 1821.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g1953 1 19643996 19655351 Tpr1g1953 1 19643996 19655351 ECH