Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1937 ATGTCTGCGGATGGTTTGTCGGGTTTCGATGTCGAAGTAAACATGAAAGACTTGACAGCAGAAGAAATACAAAATATGGAATTTGAATCTATAGAAAAAGCAGAGGAATTTTATGTAGAATATGCAAGGTGTCTTGGGTTTTCCGCTAGAAAAGATGTAAGGCGAGTCACCGCTGAAGGTGTTGTACATACACGTCAGATGGTTTGTTCTAGGCAGGGTGAGAGAGCTAAAAAAAATATTGAGCGCACTGAACGTTCGAGACAACCCAGGGGATTGTCACGAACATCTTGTGTAGCTATGATTCGATTTCACCTTAATAACAGTAGTGGTACTTATGGTGTTGTCTGCTTTATGCCCGTTCACAACCATCCTTTAACTCCATCCACACATGTTCACCTGATCCCCAAGTATCGTGGATTGAATGAAGCCGATAAGAATTTCGTAGATGGGTTGCATTCGTACGGGGTTAGATCTTGTCATATTCTGGGATATTTGATGGGTCAAAAAGGTGGTCATGCAGGGCTTGGTTTTTGCAAAAAAGACCTTTATAACTACATCACCAGGAGTGGGAAGGCAAAAATGGAGGATGTTGGCGACGCGTATTCTGCTTTGTGTGATATCCAGACAAGAACAGAAAATGACCACCTTTTTTATTGTAAGTTTACACTCGATGATATGGGGCATCTAAATAATTTGTTTTGGTGCGACGGAGCTAGTCGCGTTGACTACAGCTGTTTCGGGGAAGTGATTGCCTTCGATGCGACTTATAAGAAGAACAAATACGACAGGCCACTCGTTGTTTTTTGTGGTTACAATCACCACAAGGAAACTACAGTTTTTGCCTGTGCCTTAATTGTCAACGAAAAAACTGAGACATACAAGTGGTTGTTAGAGACATTCTTAGATGCGATGTATCAAAAGCATCCGCTTCGGGTGGTGACTGATGGAGACAATGCTATGAGAGAAGCAATTAAATGTGTATTTCCGAATGCAAGTCACCGCCTTTGTTCTTGGCATATCCACCAGAATGCACTTGAAAATGTGAAGAATAAAATTTTTTGCCAAGAGTTCTCTTCGTTGGTTTATTCTACTTGTAGCCCTGCGAGGTTTGAAAGTGAGTGGCAGAGGATTATAGATGAGCATGGTCTATCAGGGAATCCGTGGACTCGAAAGGTTTATGAGACAAGGAAAAGTTGGGCAGCTGCGTTTATGCGGTCGGATATGTTCTATGGAATGAGAACGACTTCAATGTGTGAAGGTCTAAATTCATTTGTTAAAAATTTTGTGCAGAAAAGAAGCACTCTAGTTGATTTTGTAAGGGATTTTCATAGAGCTTTAGCAGAGTACAGAAACCAGGAAATGACGTCTGATTTTGTTTCAACTTACTATAAACCTGTGATGTTAACACATATGCCAGGTCTTGAGCAAAAAGTTTCTGAGATCTTCACCAGAGCCATGTTTATGAAGGTTAGAGAACAGATAACAAATTCAGCCTCGCTGGTTATTGGTGAACAAGTTTCGTTGGGGAATACAGTGGTGATTAAAATGGATAGATTTGGCGTTCCCGGTTCAACGGTGACAGTTTGCGTTAATTTGGTTGGTCCCATTTTTAAATGTGAATGCCAACACTTTGAGCGCAGTGGGATTCCATGTTGTCACATCTTTTGTGCCATCAAGCAGAGACACATGGATTACCTCCCGGACAACCTGGTTTGCAAAAGGTGGACTAAAATGGCGAAAAATAATGTCTTGACGTGTACGGTGGATAAACAGGATGCTGATAAGTTGGAAATGTATCGTCGAAGTTCATTGACTGCTGCGTTCAATACATTGTTGGAGGTTTGTTGTAAAACTGATTCCGGTTATAAGCAGGGTATCAGTGCAATGTACGGTCTTATTAACAAGTTCAAGAAAGCTGATGCTGGGAACAGAGGAAAAAATACAAATGAAACCCCGATTCGCGACCCAAAGAAGTCGAACGCCAAAGGCGCTCCTCGCAAATACAATAAACACAAGAAGAAGAAGAATACAAAGTGTGGCCATTGTCAGATGGTTGGCCACGACAAATCTGGTTGTCCGGTACTACATCCGGGCAGCGATTTAGAATTCGACGACACTGTGCAGACTGAAAATGAATCGATTGATATGGATGTATCAGATTCGCTTACTGAAGGCAGAAACGACCGCGTACCCGGTGACAGGAGTAATGGTGGTCAGCGAAGGAAGAAACAAACTACTACAAGTACAACCACTGAAGTACCAACACAGTCCTCATCATCCAGCTACAATGTAGGGCACGGATACCCGCACTTTCCATCACAGTTTAGAGTAAATCAAAGTGTGGGGTTGTTTCCAAACTTTCCACCATCGGCTAACTGTGCACCGTATGCGCCACCAATGAACAGTAATATGGCTAACTGTGCACCGCATGCGCCACCAACGAACAGTTATATGCCGGGTGGATCTCATAATGTTCCTTCTCGTTCATCGTTCTTGCAAACCTTGGGGGACGTGGAGCTGAAAGCAAAAATGAAGAAAGAACGACCGGAAAATTGA 2556 0.4253 MSADGLSGFDVEVNMKDLTAEEIQNMEFESIEKAEEFYVEYARCLGFSARKDVRRVTAEGVVHTRQMVCSRQGERAKKNIERTERSRQPRGLSRTSCVAMIRFHLNNSSGTYGVVCFMPVHNHPLTPSTHVHLIPKYRGLNEADKNFVDGLHSYGVRSCHILGYLMGQKGGHAGLGFCKKDLYNYITRSGKAKMEDVGDAYSALCDIQTRTENDHLFYCKFTLDDMGHLNNLFWCDGASRVDYSCFGEVIAFDATYKKNKYDRPLVVFCGYNHHKETTVFACALIVNEKTETYKWLLETFLDAMYQKHPLRVVTDGDNAMREAIKCVFPNASHRLCSWHIHQNALENVKNKIFCQEFSSLVYSTCSPARFESEWQRIIDEHGLSGNPWTRKVYETRKSWAAAFMRSDMFYGMRTTSMCEGLNSFVKNFVQKRSTLVDFVRDFHRALAEYRNQEMTSDFVSTYYKPVMLTHMPGLEQKVSEIFTRAMFMKVREQITNSASLVIGEQVSLGNTVVIKMDRFGVPGSTVTVCVNLVGPIFKCECQHFERSGIPCCHIFCAIKQRHMDYLPDNLVCKRWTKMAKNNVLTCTVDKQDADKLEMYRRSSLTAAFNTLLEVCCKTDSGYKQGISAMYGLINKFKKADAGNRGKNTNETPIRDPKKSNAKGAPRKYNKHKKKKNTKCGHCQMVGHDKSGCPVLHPGSDLEFDDTVQTENESIDMDVSDSLTEGRNDRVPGDRSNGGQRRKKQTTTSTTTEVPTQSSSSSYNVGHGYPHFPSQFRVNQSVGLFPNFPPSANCAPYAPPMNSNMANCAPHAPPTNSYMPGGSHNVPSRSSFLQTLGDVELKAKMKKERPEN* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1937 851 MobiDBLite consensus disorder prediction 642 662 - -
Tpr1g1937 851 MobiDBLite consensus disorder prediction 719 740 - -
Tpr1g1937 851 Pfam FAR1 DNA-binding domain 36 126 IPR004330 -
Tpr1g1937 851 ProSiteProfiles Zinc finger SWIM-type profile. 524 562 IPR007527 GO:0008270
Tpr1g1937 851 Pfam MULE transposase domain 249 343 IPR018289 -
Tpr1g1937 851 MobiDBLite consensus disorder prediction 72 91 - -
Tpr1g1937 851 MobiDBLite consensus disorder prediction 663 680 - -
Tpr1g1937 851 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 22 605 IPR031052 GO:0006355
Tpr1g1937 851 MobiDBLite consensus disorder prediction 72 89 - -
Tpr1g1937 851 MobiDBLite consensus disorder prediction 712 762 - -
Tpr1g1937 851 MobiDBLite consensus disorder prediction 642 680 - -
Tpr1g1937 851 PANTHER OS02G0262500 PROTEIN 22 605 - -
Tpr1g1937 851 MobiDBLite consensus disorder prediction 741 762 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1937 Tpr-Chr1 19472318 19475046 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tpr1g1937 MULE 8e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1937 - - ccaj:109792835 625.165