Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g1910 ATGTCTATCACGATGGCACAATCATGCCTACTCTCTCAACATTCACTCTTATACACCAAAACCAAATTTCCAATTATCTCAAATTCTGTTAAGCCCTTCAAGCTACAAAACCCATCATCATTTAACAATAATTCTTCAACATTTTCGCGCTCTCTCCCTCTCACTAGTAGGAGAAAAACCCGCCATTCTTCTTTTCTCACATTTGCTGGTGATGAAGGGAATTCCGAGGATCCATATAAAAGTTTGAATGTCTTCATTAGTAATTTGCCTGATGGTCTTAGGCTTGGGAAATTGTCTATGCTTTTTGAGGAGGTTGGGATTGTAGATGGTGCTTTGCTAAATGCTGGTAATGTTGATGGAAAAAGTTTTGCAAGTGTAACTATGAGTACAGTTGAAGAAGTTGAGAAGGCTATCGAGAAATTCAATGGCTATGTATTAAATGGAAAATTGTTGACAGTTAGTAGGGAGAAACCAAAGCCTCGTCGTGCCTATTATAGGGCCCATTTTTATATCAGCGTTAGCAACTTGCCGAAGGATGTTGACAGTGGTCGCTTGAAGGAAATTTTCAGCAAATATGGTCGGGTTTATGAAGTTCGGATTGACTATAACGAACGGTTGGATGAATCAACTGGGTCTCTTATAATGATCAATGAGACTCAAATGAATAATGCCATTGCTGCTCTTGACGGTCAGAACTTGGACGGGAAGGTAATCAGATTGTTTGTTGAAACTTTAGAGACCATGTAA 747 0.3909 MSITMAQSCLLSQHSLLYTKTKFPIISNSVKPFKLQNPSSFNNNSSTFSRSLPLTSRRKTRHSSFLTFAGDEGNSEDPYKSLNVFISNLPDGLRLGKLSMLFEEVGIVDGALLNAGNVDGKSFASVTMSTVEEVEKAIEKFNGYVLNGKLLTVSREKPKPRRAYYRAHFYISVSNLPKDVDSGRLKEIFSKYGRVYEVRIDYNERLDESTGSLIMINETQMNNAIAALDGQNLDGKVIRLFVETLETM* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g1910 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 240 IPR000504 GO:0003723
Tpr1g1910 248 PANTHER OS02G0815200 PROTEIN 66 242 - -
Tpr1g1910 248 SMART rrm1_1 83 154 IPR000504 GO:0003723
Tpr1g1910 248 SMART rrm1_1 170 241 IPR000504 GO:0003723
Tpr1g1910 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 239 IPR000504 GO:0003723
Tpr1g1910 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 151 IPR000504 GO:0003723
Tpr1g1910 248 Gene3D - 78 162 IPR012677 -
Tpr1g1910 248 SUPERFAMILY RNA-binding domain, RBD 81 241 IPR035979 GO:0003676
Tpr1g1910 248 Gene3D - 170 245 IPR012677 -
Tpr1g1910 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 158 IPR000504 GO:0003723
Tpr1g1910 248 PANTHER RIBONUCLEOPROTEIN 66 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g1910 Tpr-Chr1 19108212 19111953 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g1910 83 238 Eukaryotic Initiation Factors Gene Family AT1G22760 25.989 2.56e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g1910 - - gmx:100804984 162.925